Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico...    30   0.68 
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico...    30   0.68 
At2g03060.1 68415.m00259 MADS-box family protein                       29   1.6  
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    29   2.1  
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    28   2.7  
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa...    28   2.7  
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    27   4.8  
At5g19240.1 68418.m02291 expressed protein                             27   6.3  
At3g20810.2 68416.m02632 transcription factor jumonji (jmjC) dom...    27   6.3  
At3g20810.1 68416.m02631 transcription factor jumonji (jmjC) dom...    27   6.3  
At5g46280.1 68418.m05697 DNA replication licensing factor, putat...    27   8.4  
At3g55720.1 68416.m06190 expressed protein contains Pfam profile...    27   8.4  
At2g03480.2 68415.m00308 dehydration-responsive protein-related ...    27   8.4  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    27   8.4  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    27   8.4  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    27   8.4  
At1g01600.1 68414.m00077 cytochrome P450, putative similar to cy...    27   8.4  

>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 547

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -1

Query: 324 IPVSSPSQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSLL 169
           +P  SPS  R          SG F S   +HS   +PP PFT CNS ++S L
Sbjct: 112 LPPLSPSPFRDHDVSMEDRDSGVFNS---NHS---LPPSPFTRCNSTSSSSL 157


>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 553

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -1

Query: 324 IPVSSPSQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSLL 169
           +P  SPS  R          SG F S   +HS   +PP PFT CNS ++S L
Sbjct: 112 LPPLSPSPFRDHDVSMEDRDSGVFNS---NHS---LPPSPFTRCNSTSSSSL 157


>At2g03060.1 68415.m00259 MADS-box family protein 
          Length = 337

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 254 KRPEVTTKAPGAVRRICDGDDTGIQNKDLTNRNSYSCNEGHV*RHSLRVSSCVEHHRTSP 433
           K PE+T   PG      D  +TG   +D +++  ++ N  ++  ++  + + + HH+T P
Sbjct: 203 KSPEMTI--PGQETSFLDELNTGQLKQDTSSQQQFT-NNNNITAYNPNLHNDMNHHQTLP 259

Query: 434 P 436
           P
Sbjct: 260 P 260


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 232 LVRRHPSAPLYPL*-LCCHLSPPGRSSHGRVLXEELXGERASGSGIGILPP 83
           L+RR  SA ++P    C ++  PG SSH   L          G G  + PP
Sbjct: 58  LLRRVDSARVFPATDECFYVRDPGSSSHDAQLLRRKLDIHVQGQGSAVPPP 108


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 279 ALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSL 172
           A+ V+    T    S  CGDI   P  +C S+  SL
Sbjct: 375 AIEVSCSSSTQSNTSSICGDISTGPLRNCGSMGISL 410


>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
           family protein
          Length = 408

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 279 ALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSL 172
           A+ V+    T    S  CGDI   P  +C S+  SL
Sbjct: 174 AIEVSCSSSTQSNTSSICGDISTGPLRNCGSMGISL 209


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 166 GRSSHGRVLXEELXGERASGSGIG 95
           GR  HGRV+      +R SG G G
Sbjct: 103 GRDLHGRVVKVNYANDRTSGGGFG 126


>At5g19240.1 68418.m02291 expressed protein
          Length = 199

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 181 HLSPPGRSSHGRVLXEELXGERASGSGIGI 92
           H S P  SS   VL + L   + +G+G+GI
Sbjct: 117 HHSTPDLSSFANVLTKNLNDSKFTGAGVGI 146


>At3g20810.2 68416.m02632 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 429

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  GGECRCLNHWLSPXPTLRPILYHE 156
           GGE + LN W  P  T+ P L+H+
Sbjct: 306 GGELQSLNAWFGPAGTVTP-LHHD 328


>At3g20810.1 68416.m02631 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 418

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  GGECRCLNHWLSPXPTLRPILYHE 156
           GGE + LN W  P  T+ P L+H+
Sbjct: 295 GGELQSLNAWFGPAGTVTP-LHHD 317


>At5g46280.1 68418.m05697 DNA replication licensing factor, putative
           similar to SP|Q43704 DNA replication licensing factor
           MCM3 homolog (Replication origin activator) (ROA
           protein) {Zea mays}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 776

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 283 GGFSGYFRTLHVRASLTLVRRHPSAPLY 200
           G  +G FRT+ +  ++ L+ +  +AP+Y
Sbjct: 241 GSVNGVFRTILIANNIALLNKEANAPIY 268


>At3g55720.1 68416.m06190 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 438

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 131 VGWGESQWFRHRHSPPIPIGPKYR 60
           V W +S W  H H+   P GP  R
Sbjct: 205 VDWRQSPWLAHSHASNEPSGPLRR 228


>At2g03480.2 68415.m00308 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase;
           non-consensus GA donor site at exon 4
          Length = 595

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 225 GDIPP--HPFTHCNSVATSLLPDEALM-VEYWXKSWXGREPVVQASAFSPHP 79
           GD  P  HP   C S  TSL P+E     + W  +      ++    FS HP
Sbjct: 383 GDSVPYYHPLVPCISGTTSLKPEEFFEDTQIWRSALKNYWSLLTPLIFSDHP 434


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 178 LSPPGRSSHGRVLXEELXGERASGSGIGILPPSPLGLS 65
           L  P  S+        L G+  S +G+G LP SPL  S
Sbjct: 355 LPAPSSSNFFGQSSSNLLGQNPSTTGVGYLPGSPLNSS 392


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 431 GMSYGV-LRKTIHVNCDVTRVLHYKSNYFYLLGLYFG 324
           G++ G+ L    H+ CD  R+LH K+  F  +  +FG
Sbjct: 387 GIAVGIGLHAISHLACDFPRLLHAKNVEFEPMKKFFG 423


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 431 GMSYGV-LRKTIHVNCDVTRVLHYKSNYFYLLGLYFG 324
           G++ G+ L    H+ CD  R+LH K+  F  +  +FG
Sbjct: 387 GIAVGIGLHAISHLACDFPRLLHAKNVEFEPMKKFFG 423


>At1g01600.1 68414.m00077 cytochrome P450, putative similar to
           cytochrome P450 GI:10442763 from [Triticum aestivum]
          Length = 554

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 388 VTSHVSFITRVTISIC*VFILDSRIVPITNAADGPGGFSGYFRTLHVRASLT-LVRRHPS 212
           +T H +   ++   IC V I       + +  + P GF    R ++++A+++  +R +PS
Sbjct: 324 ITMHPTVEDKIVREICSVLIETRGTDDVASWTEEPLGFDEIDRLVYLKAAISETLRLYPS 383

Query: 211 AP 206
            P
Sbjct: 384 VP 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,736
Number of Sequences: 28952
Number of extensions: 284081
Number of successful extensions: 779
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)