Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F03
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.5  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   7.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   9.9  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    24   9.9  

>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -3

Query: 411 FNAQMEKVILRYRTVRFYNKVASVVTYFEEAGILRYVNYPNFFFEIYFHFSFNQGCYTNR 232
           FN Q  K+   ++ +  +  + + ++YF  AG     + P +  E+Y + +F  G + + 
Sbjct: 296 FNGQAVKLSYTHKFMLVFLSMVAFISYFNIAGY--QASVPIYAKELYHYNAFQSGNFLSL 353

Query: 231 S 229
           S
Sbjct: 354 S 354


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 420 IQIFNAQMEKVILRYRTVRFYNKVASV 340
           +Q+ N    KV+   + V+FY ++ASV
Sbjct: 758 LQVLNFSPAKVMAHPKVVQFYKQLASV 784


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 303 VNYPNFFFEIYFHFSF 256
           + Y +FFFE +F FSF
Sbjct: 66  MRYLSFFFEFFFLFSF 81


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 316 TSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGNENDVPVV 447
           T   E +       I+P  P P N     +++N+N N + V  V
Sbjct: 269 TKLCESNTLLNGLTIRPQKPTPTNCGLQHALDNINANTDFVQYV 312


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 41  RNKNIFSQK*NGFFYKE-LFFVFTIRGSKFN 130
           +NKN+ S   N F+Y++ +   +  R SKFN
Sbjct: 223 KNKNLISSAVNAFYYRDPIDENYCDRMSKFN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,148
Number of Sequences: 5004
Number of extensions: 40202
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)