Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F03
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520     30   1.1  
07_01_0561 + 4171812-4172144,4173468-4174253                           28   3.2  
01_01_0808 + 6287428-6287683,6287801-6288016,6288165-6288310,629...    27   5.6  
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    27   7.4  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    27   7.4  
09_04_0334 + 16779883-16780150,16780618-16781828                       27   9.8  
06_03_1175 + 28168007-28170058                                         27   9.8  
05_06_0080 + 25420371-25420423,25420681-25420780,25421742-254218...    27   9.8  

>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
          Length = 568

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 378 YRTVRFYNKVASVVTYFEEAGILRYVNYPNFFFEIYFHFSFNQGCYTNRS*QHLANVYTL 199
           YR +  Y +V + +T  E+  I + +NY     E   H + N G  T  + Q LA+ +T+
Sbjct: 397 YRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTV 456

Query: 198 I 196
           +
Sbjct: 457 L 457


>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 IKPNGPIPKNYFFHLSVENLNGNENDVPVV 447
           I P G +  N++  L  E L G END PVV
Sbjct: 320 IGPQGELNDNFWEELLNEGLVGEENDNPVV 349


>01_01_0808 +
           6287428-6287683,6287801-6288016,6288165-6288310,
           6290305-6290584,6290969-6291165
          Length = 364

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 59  SQK*NGFFYKELFFV--FTIRGSKFNVFERT 145
           +Q+  GFF+K LFF+  F +    F+VF +T
Sbjct: 156 AQECKGFFHKSLFFMGEFGVNDYSFSVFGKT 186


>09_04_0072 +
           14323449-14324274,14324351-14324447,14325175-14325277,
           14325359-14325412,14325495-14325569,14325597-14325650,
           14325687-14325755,14325840-14325923,14326115-14326312,
           14326428-14326927,14327011-14327140,14328226-14328317,
           14328776-14328954,14329114-14329316,14329398-14329499,
           14330047-14330209,14330690-14330979,14331088-14331225,
           14331311-14331390,14331510-14331606,14331685-14331814,
           14331921-14332162
          Length = 1301

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 253 IEAEMEIYFEKEVRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNY 390
           ++ + ++  +  V+ +DV ++T  LE+S N R       G +P NY
Sbjct: 877 LKEQRKLLSDSSVKYVDVGKDTYLLEVSENLR-------GSVPHNY 915


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -2

Query: 265 FQLQSRLLYKPKLTTPCQCLYANRS**IIPNPQGSYL---VSAGPFKDIEFTPTNSKNKK 95
           F +++ L++KP    P QCL    S      P+GS L   V  GP K+   TPT  K  K
Sbjct: 478 FSMKNNLVWKPHNPLPPQCLRLPPS----ATPRGSALKKGVLPGPIKE---TPTPVKKTK 530


>09_04_0334 + 16779883-16780150,16780618-16781828
          Length = 492

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 184 IIPNPQGSYLVSAGPFKDIEFTPTNSKNKKQLF 86
           I+  P+GSY + AGP     F P ++K K   F
Sbjct: 246 IVSLPKGSYNLHAGPRAGFGFDPHSNKYKVARF 278


>06_03_1175 + 28168007-28170058
          Length = 683

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 172 PQGSYLVSAGPFKDIEFTPTNSKNKKQLFV 83
           P   Y  +AG +KD +FTP  S  K+ + V
Sbjct: 288 PACVYSPAAGYYKDFDFTPAYSCEKRPIVV 317


>05_06_0080 +
           25420371-25420423,25420681-25420780,25421742-25421888,
           25421959-25422039,25422147-25422296
          Length = 176

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 289 VRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGNENDVPVVS 450
           V + DV+   SF  ++N R +F+I+ +   P N+ F L    ++ +  +  VVS
Sbjct: 76  VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVS 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,457
Number of Sequences: 37544
Number of extensions: 194828
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)