Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F03
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13)                 27   7.7  
SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)                   27   7.7  

>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 313 NTSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGNENDV 438
           NTS  + +NN  +F+I  +  I +N+  H + +N   N N +
Sbjct: 148 NTSIAKDNNNNNNFIIIRDSGIVRNHSSHHNTKNNGDNNNTI 189


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 370 GPIPKNYFFHLSVENLNGNENDVPVVSRFVL 462
           GP+    F HL   N +GN +D P  +R +L
Sbjct: 3   GPVLAYIFDHLLSSNQDGNNSDTPAFARLLL 33


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 370  GPIPKNYFFHLSVENLNGNENDVPVVSRFVL 462
            GP+    F HL   N +GN +D P  +R +L
Sbjct: 2164 GPVLAYIFDHLLSSNQDGNNSDTPAFARLLL 2194


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/49 (20%), Positives = 27/49 (55%)
 Frame = +1

Query: 280 EKEVRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGN 426
           +++ ++ D+ +  S++++   R+  V+KP+  + +     L  E + GN
Sbjct: 214 KQQEKLNDLHKQLSYVQMKGQRKAVVLKPDSLVDQQRLRELQKEQIKGN 262


>SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13)
          Length = 506

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 381 RYRTVRFYNKVASVVTYFEEAGILRYVNY 295
           RYR +   N V SV+ YF   G+L    Y
Sbjct: 98  RYRCILLMNIVLSVIIYFSLTGVLAVHEY 126


>SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)
          Length = 589

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 PIPKNYFFHLSVENLNGNENDVPVVSR 453
           P   NY +H  V+N +G+  D+P V R
Sbjct: 526 PCRLNYKYHRLVQNASGSGADLPTVER 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,206
Number of Sequences: 59808
Number of extensions: 255784
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)