Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F03
         (464 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066334-1|AAH66334.1|  137|Homo sapiens chromosome 13 open read...    34   0.28 
AL354833-2|CAC13101.1|  137|Homo sapiens chromosome 13 open read...    34   0.28 
AF036549-1|AAF04336.1|  117|Homo sapiens RGC32 protein.                34   0.28 

>BC066334-1|AAH66334.1|  137|Homo sapiens chromosome 13 open reading
           frame 15 protein.
          Length = 137

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 436 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 293
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 49  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 96


>AL354833-2|CAC13101.1|  137|Homo sapiens chromosome 13 open reading
           frame 15 protein.
          Length = 137

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 436 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 293
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 49  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 96


>AF036549-1|AAF04336.1|  117|Homo sapiens RGC32 protein.
          Length = 117

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 436 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 293
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 29  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,120,066
Number of Sequences: 237096
Number of extensions: 1178050
Number of successful extensions: 2133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2133
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)