Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F03
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28500.1 68417.m04077 no apical meristem (NAM) family protein...    30   0.67 
At3g18820.1 68416.m02390 Ras-related GTP-binding protein, putati...    29   1.2  
At1g61320.1 68414.m06911 hypothetical protein                          29   1.2  
At1g05820.1 68414.m00609 protease-associated (PA) domain-contain...    29   2.0  
At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putati...    27   4.7  
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    27   6.2  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   6.2  
At5g46130.1 68418.m05673 hypothetical protein contains Pfam prof...    27   8.3  
At1g80865.1 68414.m09488 expressed protein                             27   8.3  

>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 305

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 436 RHFHYHSNFQRSNGKSNSS 380
           RH HYH +    NGKSN S
Sbjct: 250 RHLHYHLHHNNGNGKSNGS 268


>At3g18820.1 68416.m02390 Ras-related GTP-binding protein, putative
           similar to Ras-related protein RAB7 GI:1370186 from
           [Pisum sativum], Plant Mol. Biol. 21 (6), 1195-1199
           (1993); contains Pfam profile: PF00071 Ras family
          Length = 206

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 289 VRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHLSVENLNGNENDVPVVS 450
           V + DV+   SF  ++N R +F+I+ +   P+N+ F L    ++ ++ +  VVS
Sbjct: 85  VLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPFVLIGNKVDVDDGNSRVVS 138


>At1g61320.1 68414.m06911 hypothetical protein
          Length = 459

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 447 YDGYVIFITIQIFNAQMEKVILRYRTVRFYNKVASVV 337
           YDGYVI + I I NA  E  +   R  R Y++ + +V
Sbjct: 247 YDGYVICVNILITNALKEANLYYTRIRRLYHQKSDLV 283


>At1g05820.1 68414.m00609 protease-associated (PA) domain-containing
           protein contains weak similarity to protease associated
           (PA) domain proteins, Pfam:PF02225
          Length = 441

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 99  LFLLFVGVNSMSLKG-PALTRYDPCGLGIIYYDRLAYKHWQGVVNFG 236
           LFL ++G+  M+  G PAL    PC LGI     L  K  + + N+G
Sbjct: 380 LFLTYLGLYVMNGHGQPALLYLVPCTLGITVILGLVRKELRDLWNYG 426


>At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putative
           contains Pfam profile: PF00071 Ras family
          Length = 206

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 289 VRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFF 396
           V + DV+   SF +++N R +F+I+ +   P+N+ F
Sbjct: 85  VLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120


>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  LFLLFVGVNSMSLKGPALTRYDPCGLGI 182
           LF L +G++ +   GP L  ++  GLG+
Sbjct: 89  LFRLIMGISVLDFDGPGLPPFEAFGLGV 116


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 66  SKMDFFTKSCFLFLLFVGVNSMSLKGPALTRYDPCGLGIIYYDRLAYKHW 215
           S+   F   C     F+G+   +L   A  R+D   L + Y D +   HW
Sbjct: 509 SECSSFFLECIKCKSFLGIKCATLPSEAHYRHDRHPLTLCYRDYMTSHHW 558


>At5g46130.1 68418.m05673 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 298 IDVSQNTSFLEISNNRRDFVIKPNGPIPKNYFFHL 402
           I + +NTS  ++ N R +   KP+ P  K+   HL
Sbjct: 92  IHMKENTSLRDMDNVRLNIYYKPSDPKSKSVSVHL 126


>At1g80865.1 68414.m09488 expressed protein
          Length = 130

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 321 AGILRYVNYPNFFFEI-YFHFSFNQGC 244
           + +LRY+ + + F  I YF FSF+ GC
Sbjct: 11  SSLLRYIQHGSDFQVIFYFRFSFSFGC 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,363
Number of Sequences: 28952
Number of extensions: 184383
Number of successful extensions: 470
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)