Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F02
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.095
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    30   1.2  
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.7  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.6  
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport...    28   3.6  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    28   3.6  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   6.2  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    27   8.3  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   8.3  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   8.3  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 136 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 261
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +2

Query: 245  VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 424
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I   +
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 425  QNTTPCVVAIIKLTKT 472
            Q    CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +2

Query: 302 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 427
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 440 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 336
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 583

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 329 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTK 469
           H Y+  GKHQ+     HH    R   + A +  +  PC V  +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 320 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 433
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 230 IHSGRFPS*DLFHPFLSINKFALFS 156
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 178 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 282
           +DK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 136  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 267
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 136 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 273
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,971
Number of Sequences: 28952
Number of extensions: 277697
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)