Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F01
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0106 + 788967-789555,790139-790162,790339-791411                 31   0.84 
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.86 
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   7.8  
10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885           27   7.8  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   7.8  

>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 287 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 460
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 461 TPGQNKIV 484
             GQN ++
Sbjct: 491 FTGQNLLI 498


>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.86
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 355 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 254
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.86
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 223 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 131
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 92  INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 271
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 272 FKVRQPRLNHKPFSVTIDVKSDIAT 346
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885
          Length = 489

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +2

Query: 299 HKPFSVTIDVKSDIAT-----DAVIKIFLGPKYNDXGFPITLEENWHKFYEL 439
           HK  SV++D+K+ +       D + KI   P+Y    F +TL  NW+   EL
Sbjct: 218 HKSGSVSVDIKASVLGRFWLFDCLEKI---PEYEQAMFLMTLWRNWYVRNEL 266


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +2

Query: 92  INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 271
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 272 FKVRQPRLNHKPFSVTIDVKSDIAT 346
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,527
Number of Sequences: 37544
Number of extensions: 251527
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)