Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F01
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 2.6
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10) 29 3.5
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68) 28 4.6
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 28 6.1
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 20 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 199
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 200 YSQ 208
Y Q
Sbjct: 240 YGQ 242
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 60 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 227
++++ T + +TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
Length = 688
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 364 DLDNGISGNIGLNVDGN 314
++D G+SGN LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 206 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 385
+ D +SV + + + S + +++ ++ + + I V + + + I Y
Sbjct: 273 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 332
Query: 386 DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 499
G + L +W + ++L+W + K+ G+N + + E
Sbjct: 333 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 206 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 385
+ D +SV + + + S + +++ ++ + + I V + + + I Y
Sbjct: 756 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 815
Query: 386 DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 499
G + L +W + ++L+W + K+ G+N + + E
Sbjct: 816 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854
>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
Length = 306
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 8 FMPSALDFYQTALRDPAFYQLYNRIVGYINAF 103
F+P+ L F T+ D FY NR +G IN++
Sbjct: 13 FIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44
>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 413 ENWHKFYELDWFTHKITPGQNKIVRN 490
+ WHK YELD F K + N I+RN
Sbjct: 66 KEWHK-YELDKFMEKTSSYHNTILRN 90
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 137 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 229
LH G K++D VVE + F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210
>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -3
Query: 364 DLDNGISGNIGLNVDGNT--ERLVVES 290
++D G+ GN LN+DG+ E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 27.5 bits (58), Expect = 8.0
Identities = 27/104 (25%), Positives = 40/104 (38%)
Frame = +2
Query: 92 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 271
+ F+ L PYP ++HF VV + + D TNS F ++ P +
Sbjct: 623 LTEFQTNLVPYP--RIHFPMASYAPVVSAEKAYHEQLTVADITNSCFEPANQMVKCDPRH 680
Query: 272 FKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDXGFPI 403
K L ++ V DV S IAT K + GF +
Sbjct: 681 GKYMACCLLYRGDVVPKDVNSAIATIKTKKTIQFVDWCPTGFKV 724
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 406 CDGESXIVVLRSQEDLDNGISGNIG-LNVDGNTERLVVESW 287
C ES ++LR+ ED+ + GN+G LN+ T+ V SW
Sbjct: 815 CGAESNELILRTFEDVPSVAPGNVGTLNLTSMTDLRV--SW 853
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,896
Number of Sequences: 59808
Number of extensions: 310881
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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