Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F01
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    32   0.23 
At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    31   0.70 
At2g23200.1 68415.m02771 protein kinase family protein contains ...    29   2.1  
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    28   3.7  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    28   3.7  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   5.0  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   6.5  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    27   8.7  
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai...    27   8.7  

>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 404 TLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 520
           T+  +W KF  +D +TH+   G    +   N+ ++F ED
Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329


>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 549 NFMRSVNGKESSLKSENSFELRTILFCPGVILC 451
           + +    GK SSL   N FE+  I  C G+ILC
Sbjct: 81  DLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 332 SDIATDAVIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 502
           S +A    I++F  P  +D   P   ++N H  Y L+    KITP  + + R     ++ 
Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234

Query: 503 SLFKEDS 523
            L+++DS
Sbjct: 235 FLYRKDS 241


>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 368 LGPKYNDXGFPITLEENWHKFY 433
           + P+YND  FP    + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 368 LGPKYNDXGFPITLEENWHKFY 433
           + P+YND  FP    + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 17  SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 196
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 197 DYSQFDATNSVFLTK 241
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 295 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 155
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +2

Query: 53  PAFYQLYNRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQF 211
           PA  QL  R++G     +A+ +YL  Y      K  F +   IND ++  +  FF+ S+ 
Sbjct: 200 PALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRH 259

Query: 212 DATNSVFLTKK 244
           DA  ++ + K+
Sbjct: 260 DAVKALNIYKR 270


>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -3

Query: 478 LVLPRSYLVR-EPI--QFVEFMPVFFQCDGESXIVVLRSQEDLDNGISGNIGLNVD-GNT 311
           +V+P  Y VR E +  Q  EF  +F+ CD E+ +  +   +     +   IGL +D   +
Sbjct: 95  IVIPIFYKVRTEDVEKQTGEFGHMFWSCDEEASLEEMEKWQVALKAVCNKIGLTLDLKRS 154

Query: 310 ERLVVESWLTNLEVVWVT 257
           E   ++  L  +E V  T
Sbjct: 155 EAKFIKKVLKAVEEVLTT 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,633
Number of Sequences: 28952
Number of extensions: 220487
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)