Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E24
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   1.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   1.7  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   1.7  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   2.3  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   3.0  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    25   6.9  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    24   9.1  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 137 IYYNCKYPVDIKTSVLVVSGKPKLIALDY 223
           IYY  + P+D+K+ V+  S  P +I   Y
Sbjct: 601 IYYGSEKPLDLKSCVIDTSTAPLIIITSY 629


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 68  GLLFIDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTSVLVVSGKPKLIALDYCID 232
           GL+ ++    +A  +S      SIY N     ++++  LV+ G     ALD+ ++
Sbjct: 812 GLVIVNEETKEATAESVMAKLSSIYRNEATTGNVESMALVIDGVSLTYALDFSLE 866


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 134 SIYYNCKYPVDIKTSVLVVSGKPKLIALDYCIDTTSDEEL 253
           SI Y  K P D+ T+    SGKP+L      ++ T+ E++
Sbjct: 569 SILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKV 608


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +2

Query: 53  CLKPGGLLFIDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTSVLVVSGKPKLIALDYCID 232
           C++   L+ I  R  ++++   A P H      +  + ++ S L  S  P + ALD  ++
Sbjct: 13  CMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPREIFLKLQDSPLYNSTTPCIYALDSLLE 72

Query: 233 TTSDEELNDKS 265
              +EE  +K+
Sbjct: 73  YQQNEEAYEKN 83


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 230 DTTSDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADFKSIHE 382
           DT    E+ DK    L Y+P + S      D   D++    I    KS+ E
Sbjct: 39  DTCYAAEVFDKMMIELVYHPERTSSVIMRTDIILDSQEDDSILNKQKSVFE 89


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 23  QKMCLKNFAKCLKPGG-LLFIDHRNYDAMIDSGATPG 130
           Q   +KN A  +KPGG L+F D+ + D   +   T G
Sbjct: 144 QLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSG 180


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +2

Query: 80  IDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTSVLVVSGKPKLIALDYCIDTTSDEELND 259
           + H  +   +  G +P    YY    P   KT   +++ +   I  +YC       E   
Sbjct: 166 VAHGIFSVCVSLGISPNIRCYYPKNAPHASKTMSFILANQLSEIVEEYCSKHPGYHEAAS 225

Query: 260 KS 265
           KS
Sbjct: 226 KS 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,883
Number of Sequences: 5004
Number of extensions: 33641
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)