Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E24
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           31   0.31 
07_01_0355 + 2597592-2598280,2599150-2599426                           29   2.2  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    27   5.1  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     27   6.8  
09_04_0241 + 15962439-15962795,15962809-15963102                       27   9.0  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     27   9.0  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    27   9.0  
02_05_0460 - 29224525-29224620,29225525-29226625                       27   9.0  

>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 248 ELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADFKSIH-EVPVPAFYIHVME 418
           ELN     R     HK+S F +    A D   KH+ +A  +++   + +   Y+ V+E
Sbjct: 173 ELNSSGRIRPLNLSHKISSFVEPFTRAEDAEMKHYAFAPIETLFGRLSLSVSYVPVLE 230


>07_01_0355 + 2597592-2598280,2599150-2599426
          Length = 321

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 116 GATPGHSIYYNCKY-PVDIKTSVLVVSGKPKL 208
           GATP  +IY N  Y  V  KTS+L V    KL
Sbjct: 272 GATPAEAIYKNLSYLEVFFKTSLLAVGDAVKL 303


>08_01_0162 -
           1302497-1302787,1304608-1305271,1305380-1306927,
           1307360-1308768
          Length = 1303

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 PGHSIYYNCKYPVDIKTSVLVVSGKPKLIALDYCIDTTSDEELN 256
           P H   YN  Y VD+K SVL     P+L+++ +   TT+  EL+
Sbjct: 234 PRHRPDYNLSYKVDLK-SVL-----PELVSVGFSASTTTSFELH 271


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 65  GGLLFIDHRNYDAMIDSGATPGHSIYYNCKYPVDIK 172
           GG LF+DHR    +       G+ IY+  +Y VD K
Sbjct: 636 GGALFLDHRTSHGVGSPDGGHGNRIYFP-RYSVDRK 670


>09_04_0241 + 15962439-15962795,15962809-15963102
          Length = 216

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 347 HHIYADFKSIHEVPVPAFYI 406
           H+   D+KS+HE P+  FY+
Sbjct: 197 HYWREDYKSLHENPIKIFYM 216


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 65  GGLLFIDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTSV 181
           GG LF+D+R   A+  S A  G+ IY+  K+  D K ++
Sbjct: 688 GGALFLDYRASIALPSSEAGHGNRIYFP-KFSEDGKKAI 725


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 331 RQSCQAPHICRLQVNPRGSRTRLLYSRHGESS 426
           RQ C     C + V  R    +L++ RHG+ +
Sbjct: 170 RQDCNGTGCCSIDVPIRAQTLQLMFVRHGKGA 201


>02_05_0460 - 29224525-29224620,29225525-29226625
          Length = 398

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 84  SMNSKPPGLRHFAKFFRHIFCI 19
           ++ +KPP LR FA FF   FC+
Sbjct: 374 ALAAKPPFLRAFAAFFGGQFCL 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,369
Number of Sequences: 37544
Number of extensions: 196555
Number of successful extensions: 483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)