Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E24
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8) 73 1e-13
SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0) 30 0.99
SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22) 29 1.7
SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 27 5.3
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 27 5.3
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13) 27 5.3
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
Length = 382
Score = 72.5 bits (170), Expect = 1e-13
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 16/102 (15%)
Frame = +2
Query: 164 DIKTSVLVVSGKPKLIALDYCIDTT-------SDEELNDK---------SEFRLCYYPHK 295
DIKTSVL+V G+ ++ LDY +DT+ S+ E K S+FRL Y PH+
Sbjct: 269 DIKTSVLLVDGRATMVTLDYTVDTSKANIEKESESEPVAKKTKTESATLSKFRLSYCPHR 328
Query: 296 LSKFTKMLDEAFDNRAKHHIYADFKSIHEVPVPAFYIHVMEK 421
L+ F+ +L + F A+H + DFK + ++ PA+Y+H+++K
Sbjct: 329 LANFSNLLKDIFGKNAEHITFGDFKPLGKIENPAYYVHLIQK 370
>SB_6008| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
Length = 866
Score = 29.9 bits (64), Expect = 0.99
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 29 MCLKNFAKCLKPGGLLFIDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTS 178
+ ++N + L+ GG+L + YD + T G I + YPV IK S
Sbjct: 175 LVIENHTEVLEQGGVLTVPDELYDQASMNEVTDGLKIARSIGYPVMIKAS 224
>SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
Length = 673
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -2
Query: 292 MWIVAQSEFALIIKLFIRGSIYTVIQRDQLWFPAHDEYRSLYVNWIFTIIIYRMSRCSST 113
+W+VA A I+ + ++ D+ W PA D R+ + ++TI ++ ++ C
Sbjct: 151 IWLVAAGLAAPILYAYRIKEFSGMLYCDEDWSPAFDTTRA---SRVYTIFLFAVAYCVPF 207
Query: 112 VDHSVIVPVI 83
V SV+ VI
Sbjct: 208 VVMSVMYSVI 217
>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 35 LKNFAKCLKPGGLLFI-DHRNYD-AMIDSGATPGHSI 139
L N K LKPGGLL + D+ YD AM+ PGH +
Sbjct: 527 LLNIFKVLKPGGLLLLRDYGLYDHAML--RFAPGHKL 561
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 80 IDHRNYDAMIDSGATPGHSIYYNCKYPVDIKTSVLVVSGKPKLIAL 217
I HR++ P SIY+ YP DI +++++++ K ++I L
Sbjct: 603 IPHRHHPYPTVIYIPPSPSIYFRHPYPTDIISTIIIIT-KYQIIML 647
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 267 NSDCATIHINCQNSQKCLTR 326
NSDC I C SQKCL R
Sbjct: 43 NSDCNLEQIYCPVSQKCLNR 62
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 267 NSDCATIHINCQNSQKCLTR 326
NSDC I C SQKCL R
Sbjct: 1340 NSDCNLEQIYCPVSQKCLNR 1359
>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
Length = 774
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 92 NYDAMIDSGATPGHSIYYNCKYPVDIKTSVL 184
N + I+S +P H Y+NC YP K ++L
Sbjct: 659 NCVSRINSNPSPTHPKYHNCHYPGCGKQTIL 689
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 190 HDEYRSLYVNWIFTIIIYRMSRCSSTVDHSV 98
H + + L NW+FT RM + T HSV
Sbjct: 902 HTKEKQLPENWLFTTFTKRMQQIMLTCFHSV 932
>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 239 SDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADF 367
++EE N + +LC H++ + LDEA K IYAD+
Sbjct: 213 AEEERNRQELAQLCSKHHEIHALVQKLDEA----VKQCIYADY 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,267
Number of Sequences: 59808
Number of extensions: 242688
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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