Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E24
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39590.1 68418.m04795 expressed protein                             29   1.4  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    29   1.9  
At3g25020.1 68416.m03127 disease resistance family protein conta...    28   3.3  
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff...    27   5.7  
At1g08890.1 68414.m00989 sugar transporter family protein simila...    27   5.7  
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    27   7.5  
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ...    26   10.0 
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    26   10.0 

>At5g39590.1 68418.m04795 expressed protein
          Length = 542

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 387 GTSWIDLKSAYMWCLARLSNASS 319
           G SW++  S Y+ C  R+SN+ S
Sbjct: 96  GLSWVEFASGYVKCCGRMSNSMS 118


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +2

Query: 137 IYYNCKYPVDIKTSVLVVSGKPKLIALDYCIDTTSDEELNDKSEFRLCYYPHKLSKFTKM 316
           I  NCK  V +  S+ ++  K  L+ L  CI+     E   K +     +    SK  ++
Sbjct: 649 ILINCKSLVLVHKSIGILDKKLVLLNLSSCIELDVLPEEIYKLKSLESLFLSNCSKLERL 708

Query: 317 LDEAFDNRAKHHIYADFKSIHEVP 388
            D   +  +   + ADF ++ E+P
Sbjct: 709 DDALGELESLTTLLADFTALREIP 732


>At3g25020.1 68416.m03127 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 890

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 206 LIALDYCIDTTSDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHH 352
           L+ L  C+  +S    N+ +E      PH++  FT+  +E FD RA +H
Sbjct: 12  LLLLLSCVSPSSFFTFNNPAEGPGACGPHQIQAFTQFKNE-FDTRACNH 59


>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 638

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 236 TSDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIY 358
           T  ++ +  +E+  C+ PH L +    L  +F + +K H++
Sbjct: 33  TIPDKFSSVNEYLKCFVPHLLEETRTELSTSFKSLSKAHLF 73


>At1g08890.1 68414.m00989 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 464

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 137 IYYNCKYPVDIKTSVLVVSGKPKLIALDYCIDTTSDEELNDKSEFRLC 280
           I+    +P DI TS+L V   P+ I + + +D      L   S   LC
Sbjct: 288 IFDTAGFPSDIGTSILAVILVPQSIIVMFAVDRCGRRPLLMSSSIGLC 335


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 185 VVSGKPKLIALDYCIDTTSDEELNDKSEFRLCYY 286
           V SG  K ++    + T++ E +N   EF++C Y
Sbjct: 10  VSSGSSKSLSQSLTVSTSTTETVNGFHEFKICGY 43


>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 300

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 284 YPHKLSKFTKMLDEAFDNRAKHHIYADFKSIHEVPVP 394
           +PH+ S   + LD  F +   +H++ D +S+ ++  P
Sbjct: 169 FPHQDSADRQHLDIIFSSSKHNHVFQDGRSLKKISEP 205


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   YEDQRIQKMCLKNFAKCLKPGGLLFIDHRNYDAMIDSGATPGHSIYY 145
           YED  ++   + N    L+P  L+ +D   + + +DS + PGH + Y
Sbjct: 440 YEDDLLK--AVTNAKLLLEPHDLMLMD---FTSRVDSSSFPGHYVIY 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,795
Number of Sequences: 28952
Number of extensions: 166825
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)