Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E20
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.6  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 27   7.6  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   7.6  

>SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 99  NPDY-NPGQVHVVDNSGVP-SDG-NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 266
           NP+Y NPG  + + +     S G  + H  I NP P++        G  +P  TGP  +
Sbjct: 20  NPEYKNPGNKNGIRHPREENSHGIRNSHTRIRNPKPYWKTCHGAIRGIQQPDCTGPEMI 78


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 55   YWPW--LPQTECTWSIITLIIIQARFTWWTIVVFHRTAIV 168
            YW W  L  + C+W+ I L  ++      T++ +H+   V
Sbjct: 1296 YWSWVELVLSGCSWTSIVLYFVRFGINKSTVLTYHKDTSV 1335


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 84  HVVDHNPDYNPGQVHVVDNSGVPS 155
           +V+D NP ++P ++H+ D  GVPS
Sbjct: 183 NVLDLNPSFHPAEIHLRD-IGVPS 205


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 360 FKIAYLY--ETFTSHHGREGCRI-AWVD 286
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,968
Number of Sequences: 59808
Number of extensions: 349214
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)