Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E19
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 1.6
Z50797-3|CAC35828.1| 802|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z50797-2|CAA90672.1| 800|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 2.8
Z81116-12|CAB03309.1| 414|Caenorhabditis elegans Hypothetical p... 28 6.4
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 27 8.4
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 472 SDGRRSRIFVDELLETRRRQEKAVPADCSARYHAR*RGNN*CWNAHVHTW 621
S GRR + D RRR+ + V DC H R R ++ + H+H W
Sbjct: 79 SYGRRGKR--DVTSTDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRW 126
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 472 SDGRRSRIFVDELLETRRRQEKAVPADCSARYHAR*RGNN*CWNAHVHTW 621
S GRR + D RRR+ + V DC H R R ++ + H+H W
Sbjct: 79 SYGRRGKR--DVTSTDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRW 126
>Z50797-3|CAC35828.1| 802|Caenorhabditis elegans Hypothetical
protein T22H6.2b protein.
Length = 802
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 464 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQDDEGT 589
D + V L +S N L L GGK + A HA++Q+ GT
Sbjct: 479 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQEALGT 520
>Z50797-2|CAA90672.1| 800|Caenorhabditis elegans Hypothetical
protein T22H6.2a protein.
Length = 800
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 464 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQDDEGT 589
D + V L +S N L L GGK + A HA++Q+ GT
Sbjct: 477 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQEALGT 518
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 468 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 349
KS +SD S + ALSA +SL F + S TD +NP+T A
Sbjct: 8 KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 468 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 349
KS +SD S + ALSA +SL F + S TD +NP+T A
Sbjct: 8 KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.1 bits (62), Expect = 2.8
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = -1
Query: 603 IPALVVPSSSCMIACAAVCRNCFLLPPSSFK*FVDENTRPSTV*TKSMQESDGSSNVALS 424
I + VP SS + + + L+P S+ + R ST+ S GSSN
Sbjct: 244 ITSTTVPESSTSLLTSTLASTTTLIPTSTMSTITLTSDRTSTI------TSTGSSN---P 294
Query: 423 ASDSLVLFLSPSIRTDDSSNPTTC-ARFPPHLSSGVTVTIDIDIPRFSNN 277
S S V + S T S+P+T A P L+S +T + P +++
Sbjct: 295 PSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALTSTSPLLASS 344
>Z81116-12|CAB03309.1| 414|Caenorhabditis elegans Hypothetical
protein T06C12.13 protein.
Length = 414
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 371 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 484
E SV M G++ TK A+ + DSCID+ + D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 216 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 94
D + C+ AR R +F + D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 5 KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 178
K+ + +E + + P +K + F + + DFM +++ + LS I K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,201
Number of Sequences: 27780
Number of extensions: 273799
Number of successful extensions: 845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -