Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E19
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17220.1 68417.m02590 expressed protein                             30   1.1  
At3g18010.1 68416.m02289 homeobox-leucine zipper transcription f...    29   1.9  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   5.9  
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)...    28   5.9  
At2g46640.1 68415.m05818 hypothetical protein  and genefinder; e...    28   5.9  
At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protei...    28   5.9  

>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 278 LLENLGMSMSIVTVTPELKCGGNLAHVVGFDESSVLMLGDKKRTKESEALR 430
           +LE   +S SIV +   +  GG  A+ V      +  L D+KRT E E  R
Sbjct: 199 VLEIEKLSQSIVELEEAILAGGTAANAVRDYRRQISQLNDEKRTLERELAR 249


>At3g18010.1 68416.m02289 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]; similar to HB2
           homeodomain protein GB:CAA09367 from [Populus tremula x
           Populus tremuloides]
          Length = 366

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 531 LPPSSFK*FVDENTRPSTV*TKSMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTC 352
           LPPS +      + R   + + ++  +  +SN A+SAS   V      +RT +++N  TC
Sbjct: 245 LPPSFYSSSHHHHQRNLILNSPTVSSNMSNSNNAVSASKDTVTVSPVFLRTREATNTETC 304

Query: 351 AR 346
            R
Sbjct: 305 HR 306


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 364 SDDMRKVSTALELRCHRHY*HRHTQIFQQRFEYNTANKFE*DELID 227
           SDD  K S   + R H+H+ HRH     ++ E    +  +  E++D
Sbjct: 21  SDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILD 66


>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
           gibberellin-responsive protein 5 identical to GASA5
           [Arabidopsis thaliana] GI:1289320
          Length = 97

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 573 CMIACAAVCRNCFLLPPSSF 514
           CM  C   C+ C  +PP +F
Sbjct: 56  CMFFCLKCCKKCLCVPPGTF 75


>At2g46640.1 68415.m05818 hypothetical protein  and genefinder;
           expression supported by MPSS
          Length = 310

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 401 KRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 520
           K T+  EAL +   L    C+  V TV+   F  TN  KL
Sbjct: 243 KPTRNCEALESHYLLKIQECVGIVMTVEMYCFLLTNITKL 282


>At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protein
           contains InterPro entry IPR006153: Sodium/hydrogen
           exchanger
          Length = 815

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = -3

Query: 199 VFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFVECITSSFDKRHTLVALFV 20
           +++S+      QKR      +G    +  CIHK D++  + +  +  SF    + ++ +V
Sbjct: 469 LYDSSKRFISFQKRNLMSLKLGSELKFLVCIHKADHISGM-INLLAQSFPLHESTISCYV 527

Query: 19  VEM 11
           + +
Sbjct: 528 IHL 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,505
Number of Sequences: 28952
Number of extensions: 252223
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)