Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E17
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.16 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.16 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.9  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   4.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 14  PPAQRPLIPSPALDGTASPLRTSCTVPRAPRP-MRKQFYTQSFTNSYER 157
           PP Q+P I      G   P  T+  +P    P MR QF  +    +Y R
Sbjct: 203 PPHQQPPIQQQPNQGQQPPGNTAAALPSPLYPWMRSQFERKRGRQTYTR 251


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 14  PPAQRPLIPSPALDGTASPLRTSCTVPRAPRP-MRKQFYTQSFTNSYER 157
           PP Q+P I      G   P  T+  +P    P MR QF  +    +Y R
Sbjct: 205 PPHQQPPIQQQPNQGQQPPGNTAAALPSPLYPWMRSQFERKRGRQTYTR 253


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGT--ASPLRTSCTVPRAPRPMRKQFYTQSFTNSYER 157
           P  LPP +   IPSP       A  +  S T P  P P  ++  T S   S +R
Sbjct: 68  PVALPPKRE--IPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDASSKR 119


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 239 NVYLNVINEYYRARTHTHTIRDI 171
           N Y+ V+  +Y+ RT T  ++++
Sbjct: 79  NYYVIVVTTFYKRRTWTRLLKNL 101


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  APRPMRKQFYTQSFTNSYE 154
           AP     Q+Y+Q+  NSY+
Sbjct: 189 APIDSANQWYSQTIDNSYQ 207


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 378  LKYDTSDTLRQPNISYLYIHILEHNN 455
            +++ TSD +RQ     L+I  +  NN
Sbjct: 1345 VQFTTSDKIRQQPDGSLFIRDVSRNN 1370


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  APRPMRKQFYTQSFTNSYE 154
           AP     Q+Y+Q+  NSY+
Sbjct: 180 APIDSANQWYSQTIDNSYQ 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,922
Number of Sequences: 336
Number of extensions: 2003
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)