Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E17
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.86 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   4.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 2    PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPR 106
            P PLP A  P IP P+   TA P+    + P  P+
Sbjct: 1023 PVPLPSADAPPIPVPS---TAPPVPIPTSTPPVPK 1054



 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 2    PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
            P P P ++ P IP+P+    A P+     +P  P+P
Sbjct: 1065 PVPAPSSEIPSIPAPS---GAPPVPAPSGIPPVPKP 1097



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 2    PAPLPPAQRPLIPSPALDG-TASPLRTSCTVPRA 100
            P P+P A+ P +P+P+ +  + S  R+S   P +
Sbjct: 1228 PVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHS 1261


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   PLPPAQRPLIPSPALDGTASPL 73
           P+ P QRPL    A  GT SP+
Sbjct: 38  PITPMQRPLGKENAAPGTISPI 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,097
Number of Sequences: 5004
Number of extensions: 31035
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)