Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E17
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075) 32 0.29
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 31 0.38
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 31 0.67
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 30 1.2
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 30 1.2
SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_20871| Best HMM Match : Cauli_DNA-bind (HMM E-Value=0.99) 27 6.2
SB_5678| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=1.3) 27 6.2
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 8.2
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027) 27 8.2
SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7) 27 8.2
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 27 8.2
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 27 8.2
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 27 8.2
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 27 8.2
>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
Length = 823
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQF 124
P PP Q L+P G SPL+T C P +PR R F
Sbjct: 248 PRRTPPWQEQLLPPR---GPLSPLQTLCPSPLSPRSTRSHF 285
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 31.5 bits (68), Expect = 0.38
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQFYTQS 136
PL P P PSP L +SPL TS T P P QFY +S
Sbjct: 235 PLSPLNGP--PSPPLTEPSSPLPTSLT---PPSPSSLQFYDES 272
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASP-LRTSCTVPRAPRP 109
P PLPP + P P+P T P L ++ T+P APRP
Sbjct: 41 PRPLPPLREPPTPAP----TPPPALPSTPTLPLAPRP 73
>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 169
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQ 121
P P PPA+ ++P + T P++ V R P P K+
Sbjct: 25 PKPRPPAKPLILPKSSTISTKPPIKPKPAVRRVPPPAPKK 64
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRK 118
P P P + P PSP + + PL ++P P P K
Sbjct: 133 PFPHPTYKHPSYPSPHIQASLLPLIPHTSIPPTPHPTYK 171
>SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALD 55
P+PL A++PL+PSP D
Sbjct: 86 PSPLSQAEKPLLPSPPTD 103
>SB_20871| Best HMM Match : Cauli_DNA-bind (HMM E-Value=0.99)
Length = 252
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 213 VLPRTHTHTHNTRY 172
+LP T H+HNTRY
Sbjct: 183 ILPATQVHSHNTRY 196
>SB_5678| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=1.3)
Length = 292
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 111 MGRGARGTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
MG G G + G + S AG G+ G GG G G
Sbjct: 153 MGGGMGGMMGGGSMGGGMMSMAGGGMGGGMGGGMGGG 189
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVP 94
P P P ++P IP+ L T +P T P
Sbjct: 275 PTPTPAQKKPYIPTKILQATPTPTATIAPPP 305
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
P P PPA P P P A+P P AP P
Sbjct: 53 PPPSPPAAAPAAPPPPAAAPAAP-PPPAAPPAAPPP 87
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 233 YLNVINEYYRARTHTHTIRDIFEVMIVHRN 144
Y ++EYYR +I+ FE MIV RN
Sbjct: 1331 YNQYLSEYYRQIGEEDSIKSPFEWMIVSRN 1360
>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
Length = 345
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 8 PLPPAQRPLIPSPALDGTASP 70
PLPP+ R L+P P L G P
Sbjct: 148 PLPPSWRQLVPLPHLAGNLYP 168
>SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7)
Length = 239
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 65 SPLRTSCTVPRAPRPMRKQFYTQ 133
SPLR+SC PR P +R TQ
Sbjct: 164 SPLRSSCRRPRGPTHIRTMSTTQ 186
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 PAPLPPAQRPLIP-SPALDGTASPLRTSCTVPRAPRP 109
P PA P P SPA + +P+RT + P P
Sbjct: 31 PLETTPAPAPTTPTSPATPASGAPIRTPIPLKETPSP 67
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 PAPLPPAQRPLIP-SPALDGTASPLRTSCTVPRAPRP 109
P PA P P SPA + +P+RT + P P
Sbjct: 31 PLETTPAPAPTTPTSPATPASGAPIRTPIPLKETPTP 67
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 2 PAPLPPAQRPLIP-SPALDGTASPLRTSCTVPRAPRP 109
P PA P P SPA + +P+RT + P P
Sbjct: 24 PLETTPAPAPTTPTSPATPASVAPIRTPIPLKETPSP 60
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVP 94
PAP PP P P PAL +P R T P
Sbjct: 418 PAPPPPPPPPPPPPPALRLACAPPRLRFTSP 448
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,585
Number of Sequences: 59808
Number of extensions: 262315
Number of successful extensions: 895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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