Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E17
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   0.77 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   1.8  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   3.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    27   5.5  
AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    27   7.2  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5    APLPPAQRPLIPS-PALDGTASPLRTSCTVPRAPRPMRKQFYTQSFT 142
            AP+PPA  P  PS P++  T     +S +VP +P    +   T S T
Sbjct: 1617 APIPPASSPSAPSIPSIPSTLPVAPSSSSVPSSPSAPSESTSTVSET 1663



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGTAS-PLRTSCTVPRAPRP 109
           P P  PA  P+ P+P++  T+S P +   T P  P P
Sbjct: 448 PEPSRPAVPPVAPAPSVIPTSSQPSQPKQTQPAQPTP 484


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 108  GRGARGTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
            G G+ G+   + +G+AV S+     SG+ + GSGAG
Sbjct: 1119 GTGSGGSATTLSTGDAVRSTTSGSGSGQSSTGSGAG 1154


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 108  GRGARGTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
            G G+ G+   + +G+AV S+     SG+ + GSGAG
Sbjct: 1119 GTGSGGSATTLSTGDAVRSTTSGSGSGQSSTGSGAG 1154


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMR 115
           P P PP   P  P+P ++ +A P +T+   P AP P +
Sbjct: 24  PQP-PPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQ 60


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQ 121
           PAP P A+    P+PA++ T +P       P AP P  ++
Sbjct: 613 PAPAPAAEETPAPAPAVEETPAPAPAVEETP-APAPAAEE 651



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQ 121
           PAP P A     P+PA + T +P   +   P AP P  ++
Sbjct: 553 PAPAPAADETPAPAPAAEETPAPAPAAEETP-APAPAAEE 591


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 8   PLPPAQRPLIPSPALDGTASPLRTS-CTVPRAPRP 109
           PL    RP  PSP      +PL T+     RAP P
Sbjct: 301 PLATTSRPTTPSPTTPRATTPLATTPLATTRAPLP 335


>AF016439-4|AAV28339.1|  489|Caenorhabditis elegans Hypothetical
           protein R02F11.3b protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPA-LDGTASPLRTSCTVPRAPRPMRKQ 121
           P P+P  +  + P    +DGT  P      VPR+PR  RK+
Sbjct: 128 PPPIPEEKAVVAPLVKHIDGTDEPEVVIFDVPRSPRNPRKK 168


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPMRK 118
           P   PP ++P+ PSP    +ASPL +  + P AP+ ++K
Sbjct: 515 PTAPPPVEKPVTPSP----SASPLPSPVSSP-APQLVQK 548


>AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical
           protein W04B5.3c protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 2   PAPLPPAQRPL----IPSPALDGTASPLRTSCTVPRAPRPMRKQFYTQ 133
           P P PP+  PL     P+P++  T +  +++ + P  P+P+ +Q   Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQ 324


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 2   PAPLPPAQRPL----IPSPALDGTASPLRTSCTVPRAPRPMRKQFYTQ 133
           P P PP+  PL     P+P++  T +  +++ + P  P+P+ +Q   Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQ 324


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 2   PAPLPPAQRPL----IPSPALDGTASPLRTSCTVPRAPRPMRKQFYTQ 133
           P P PP+  PL     P+P++  T +  +++ + P  P+P+ +Q   Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQ 324


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 108 GRGARGTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
           GRG RG   D    +  P   G G  GR  GG G G
Sbjct: 346 GRGGRGQGPDFEPQDDFPGRRGSGGPGR-RGGRGQG 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,686,570
Number of Sequences: 27780
Number of extensions: 187794
Number of successful extensions: 640
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)