Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E17
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23230.1 68417.m03350 protein kinase family protein contains ... 30 0.72
At1g61080.1 68414.m06877 proline-rich family protein 29 1.3
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family... 29 1.7
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 28 2.9
At4g22770.1 68417.m03287 DNA-binding family protein contains a A... 28 3.8
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 3.8
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 3.8
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 28 3.8
At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein si... 27 6.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 6.7
At4g00500.2 68417.m00069 lipase class 3 family protein / calmodu... 27 6.7
At4g00500.1 68417.m00068 lipase class 3 family protein / calmodu... 27 6.7
At1g70250.1 68414.m08082 receptor serine/threonine kinase, putat... 27 6.7
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 27 8.9
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 27 8.9
At2g18470.1 68415.m02151 protein kinase family protein contains ... 27 8.9
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t... 27 8.9
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t... 27 8.9
At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family... 27 8.9
>At4g23230.1 68417.m03350 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 507
Score = 30.3 bits (65), Expect = 0.72
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDG 58
P PLPP+ PL+ SP+L G
Sbjct: 132 PPPLPPSSTPLVTSPSLPG 150
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 2 PAPLPPAQRPL---IPSPALDGTASPLRTSCTVPRAPRPM 112
P PLPPA PL P P PL+ S P P P+
Sbjct: 477 PPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPL 516
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
P P PPA +PL S PL T+ P P P
Sbjct: 493 PPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPP 528
>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
protein sequencing discrepancy between cDNA and genomic
sequence prevents representation of entire coding
sequence
Length = 578
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 14 PPAQRPLIPSPALDGTASPLRTSCTVPRAPR 106
PP+ + ++P P T SPL + +P PR
Sbjct: 497 PPSSKSMLPPPPRSKTMSPLSSKSMLPPPPR 527
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 297 CLVHKR*RNRLEGVDVKFYPYISGVTTLKYDTSDT 401
CLV+ R + R++ F +++G T + YD +D+
Sbjct: 194 CLVYSRKKGRVKFNSCSFSKHVTGRTKISYDQADS 228
>At4g22770.1 68417.m03287 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 334
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTAS-PLRTSCTVPR 97
P P PP Q PS A+DG +S P++ PR
Sbjct: 47 PPPPPPPQNSFTPSAAMDGFSSGPIKKRRGRPR 79
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 2 PAPLPPAQR--PLIPSPALDGTASPLRTSCTVP 94
P P+ P Q P+IPSP G + P S +P
Sbjct: 568 PTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLP 600
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 5 APLPPAQRPLIPSPALDGTASPLRTSCTVPRAPR 106
+P PP+ P +P P + SP T P AP+
Sbjct: 107 SPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPK 140
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 23 QRPLIPSPALDGTASPLRTSCTVPRAPRPMRKQFYTQSFTN 145
Q +P P++ A PL + PRP+ +Q QS TN
Sbjct: 390 QSTALPRPSVTAEARPLHQPHSNTSQPRPIPQQALAQSNTN 430
>At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 689
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 90 TVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
T +DV +G G+G SG GG G G
Sbjct: 56 TENDVNNGNIAGIGGGEGSSGGGGGGGGKG 85
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPM 112
PLPP P P PA + P TS P P P+
Sbjct: 401 PLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPV 435
>At4g00500.2 68417.m00069 lipase class 3 family protein /
calmodulin-binding heat-shock protein-related
Length = 460
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 93 GTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
GT HD GE SSAG G+ G +G S G
Sbjct: 395 GTFHDTEEGE---SSAGSGMEGSPSGWSFKG 422
>At4g00500.1 68417.m00068 lipase class 3 family protein /
calmodulin-binding heat-shock protein-related
Length = 460
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 93 GTVHDVRSGEAVPSSAGDGISGRWAGGSGAG 1
GT HD GE SSAG G+ G +G S G
Sbjct: 395 GTFHDTEEGE---SSAGSGMEGSPSGWSFKG 422
>At1g70250.1 68414.m08082 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 799
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPR-APRPMRKQFYT 130
P PP ++P P A P S + PR PRP + +T
Sbjct: 105 PDLFPPPSAQMLPPPPASSPAPPSPPSSSRPRPLPRPSMSRSFT 148
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
P P+ P P+ P + T S + TVP P P
Sbjct: 78 PMPMAPPPMPMASPPMMPMTPSTSPSPLTVPDMPSP 113
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 102 GARGTVHDVRSGEAVPSSAGDGISGRWAGGSGA 4
G GTV E P+ G SG W GG GA
Sbjct: 392 GNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGA 424
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
PAP PP+ P P + P TS P+AP P
Sbjct: 31 PAPSPPSPTP--PQGDSSSSPPPDSTSPPAPQAPNP 64
>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPM 112
P+PP P +P P + G P +P P P+
Sbjct: 137 PVPPVTVPKLPLPPISGLPIPPVVGPNLPLPPLPI 171
>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRPM 112
P+PP P +P P + G P +P P P+
Sbjct: 137 PVPPVTVPKLPLPPISGLPIPPVVGPNLPLPPLPI 171
>At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR000694
Length = 109
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 2 PAPLPPAQRPLIPSPALDGTASPLRTSCTVPRAPRP 109
P PLPP RP P L A+P + P P P
Sbjct: 52 PTPLPPFLRPFF--PPLQFAAAPFGGNIPQPPLPSP 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,127
Number of Sequences: 28952
Number of extensions: 166710
Number of successful extensions: 595
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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