Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E16
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.82 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.3  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   3.3  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   5.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.6  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 240  VEVRQRVLESIPIVVYSLGRQHRWELLTYLLQLIIDFDYIHR 115
            V+V +R L ++ + ++ L  + RWE +  +L LI DF + HR
Sbjct: 963  VKVVERYLRTVFLRIHFLISEWRWEDVAQILFLIFDF-FSHR 1003


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +1

Query: 280 IIGHDPQHKICD-RTYVDMRALPDYVNGHEATW----NFEYGTLTIDIPFRFKLTEVKTY 444
           I  H   +   D  TY D    PDY+NG            Y  +  D+P  F+ T+   +
Sbjct: 343 IYSHSASYDSVDMETYCDKHTPPDYLNGLMKRLFPLAELYYKRMATDVPLNFQATKAPDF 402


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +1

Query: 43  FVIVTTASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETI 195
           FV+V    +C +YSQ+ +N  +++ +++ K   KL++  +Q P+    E +
Sbjct: 66  FVVVFQDLKCMAYSQSLLNSAHNIFLNLFK--EKLED--RQVPNEAEVEKL 112


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 88  TAINFLNSLSMDIIKVDNK 144
           TAI+ L+SL  DII  DNK
Sbjct: 634 TAIDLLDSLIPDIIAADNK 652


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 235  FNGNFDVRIKHRMLGIIGHDP----QHKICDRTY 324
            FN +F++R K    GI+ H P    Q  +C + Y
Sbjct: 1664 FNSDFEIRAKILSSGIVEHMPNLLSQEALCAKLY 1697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,637
Number of Sequences: 5004
Number of extensions: 45327
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)