Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E16
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 33 0.16
01_01_0245 + 2013821-2014171,2014278-2014671,2015158-2015289,201... 32 0.27
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 29 3.4
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 29 3.4
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 28 4.4
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 27 7.7
01_01_0488 - 3597652-3598761,3599619-3600860 27 7.7
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 55 TTASECSSYSQTAINFLNSLSMDIIKV---DNKLKEVCKQ--FPSVLPTETINNNGYRLE 219
T EC S+ +NFL L+ + K D++ KE +Q P++LPT NG +LE
Sbjct: 702 TALQECGDISEDRLNFLPELAASVKKAALEDSEEKEKAQQDAGPTLLPTCDEEGNGKKLE 761
>01_01_0245 +
2013821-2014171,2014278-2014671,2015158-2015289,
2015747-2015788,2016096-2017057
Length = 626
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 388 GTLTIDIPFRFKLTEVKTYCGFRIDETLIHVRKGFSSMSYDYS*YILSVDHIFY 549
G LTI PF + YCG+ + + R G + +S + ++ +D+IFY
Sbjct: 40 GNLTITYPFSLSGVQ-PLYCGYPVLDLTCDNRTGHAFLSRTFREHLFRIDNIFY 92
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 94 INFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNNGYR---LEYSL 228
+NFL S S+ + ++++ + FP ++ +T +NNG+R LE SL
Sbjct: 779 VNFLFSGSLKFPSENEEIRKHYQHFPQMVIQKTSSNNGHRRMHLELSL 826
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 495 TKSFSYVDKCLVDPEAAVR--LDFSQLESKRYINR*GTVFEVPRCFV 361
TK + DKC+++ E AVR +DF +SK+ G + C++
Sbjct: 137 TKGYIVNDKCIIEAEVAVRKIVDFWNYDSKKETGYVGLKNQGATCYM 183
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 388 GTLTIDIPFRFKLTEVKTYCGFRIDETLIHVRKGFSSMSYDYS*YILSVDHIFY 549
G LTI PF + + CG+ + + R G + +S + ++ VD IFY
Sbjct: 39 GNLTISYPFSLSGVQPVS-CGYPVLDLTCDNRTGRAFLSRTFRDHLFRVDSIFY 91
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 435 DFSQLESKRYINR*GTVFEVPRCFVPVHVIR*GAHINVRSIADF 304
++SQL +N G V+ V + FV ++R H+N R D+
Sbjct: 227 NYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDY 270
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 352 VNGHEATWNFEYGTLTIDIPF 414
VNG +A + +E G +T+D+P+
Sbjct: 749 VNGQDAEFKYEDGIVTVDVPW 769
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,769
Number of Sequences: 37544
Number of extensions: 253130
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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