Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E16
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57114| Best HMM Match : Ribosomal_L23 (HMM E-Value=3.9) 29 2.0
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18) 29 3.4
SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31) 28 6.0
SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_1221| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_57114| Best HMM Match : Ribosomal_L23 (HMM E-Value=3.9)
Length = 171
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 1 AMYRLFVIITLINTFVIVTTASECSSYSQTAI----NFLNSLSMDIIKVDNKLKEVCKQF 168
++ RL++ ++ TFV + C + + + NF + S +I ++NKLKE+ K F
Sbjct: 32 SLARLYMFRSMQLTFVPGLASRRCLPANGSTVWGKANFAHCASNKLISIENKLKEIEKNF 91
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 25 ITLINTFVIVTTASECSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNN 204
I+ V + +S +Y I+ L+ L + I +N L E+ K+F S+ E +N +
Sbjct: 58 ISNFKNLVHLDVSSNGLAYISARISELDKL-LTFIGRNNNLDELPKEFGSLAKLEKLNLS 116
Query: 205 GYRLE 219
G RLE
Sbjct: 117 GNRLE 121
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 311 QILCCGSCPIMPSIRCLI 258
Q+LCC CP+ ++CLI
Sbjct: 460 QLLCCDKCPMAYHLKCLI 477
>SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18)
Length = 134
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 311 QILCCGSCPIMPSIRCLI 258
Q+LCC CP+ ++CLI
Sbjct: 22 QLLCCDKCPMAYHLKCLI 39
>SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)
Length = 242
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 67 ECSSYSQTAIN-FLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNNGYRLEYSLPDFNG 243
EC+ +++ + F+ +S++ K +N ++E+ S + N Y+ Y P +
Sbjct: 154 ECAKHAKVPVRCFVMDISLEHAKHNNAVREMTNTDSSYKHVGFMAFNSYKSSYKEPSVSE 213
Query: 244 NFDVRIK 264
FD +K
Sbjct: 214 GFDEILK 220
>SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 292 DPQHKICDRTYVDMRALPDYVNGHEATWNFEYGTLT 399
DP H + D+ LP H+ W FE GT+T
Sbjct: 234 DPPHLPVQKEQNDVDNLPSKGVTHDYRWKFETGTVT 269
>SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 67 ECSSYSQTAIN-FLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNNGYRLEYSLPDFNG 243
EC+ +++ + F+ +S++ K +N ++E+ S + N Y+ Y P +
Sbjct: 125 ECAKHAKVPVRCFVMDISLEHAKHNNAVREMTNTDSSYKHVGFMAFNSYKSSYKEPSVSE 184
Query: 244 NFDVRIK 264
FD +K
Sbjct: 185 GFDEILK 191
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 320 VLSQILCCGSCPIMPSIRCLIRTSKFPLKSGSE 222
V I+ GSCP+M + CL FP ++ +
Sbjct: 1770 VTGSIITRGSCPVMKRMSCLNLLYSFPCRTDDD 1802
>SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 70 CSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETIN 198
C + T +NFL S+ + + +++L+E+C + L + +N
Sbjct: 65 CGKHFGTILNFLRDGSIPLPQCESELRELCTESKYYLIEQLVN 107
>SB_1221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 121 DIIKVDNKLKEVCKQFPSVLPTET 192
DII ++LK+ C QF S PTET
Sbjct: 34 DIIVTGDQLKQHCHQFTSGGPTET 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,668
Number of Sequences: 59808
Number of extensions: 330509
Number of successful extensions: 1502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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