Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E16
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase f...    30   1.2  
At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    29   2.8  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   3.7  
At5g18520.1 68418.m02187 expressed protein                             28   4.9  

>At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 334

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 103 LNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNN 204
           +NS S+DI    ++LK+  K+FP  L    INNN
Sbjct: 92  MNSSSIDIGSELSELKQFAKEFPPELKGLAINNN 125


>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +1

Query: 70  CSSYSQTAINFLNSLSMDIIKVDNKLKEVCKQFPSVLPTETINNN 204
           C++ +  AI  LNS  +DI    + LKE  K FPS L    INN+
Sbjct: 82  CATQAILAI-LLNSPEVDIGPELSALKEFTKNFPSDLKGLAINNS 125


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 160  KQFPSVLPTETINNNGYRLEYSLPDFNGNFDVRIKH-RMLGIIG---HDPQHKI 309
            +  P  LP     +NG++  Y   D+ GNF   +   + +G +G   H  QH+I
Sbjct: 1422 EMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRI 1475


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 323 YVLSQILCCGSC--PIMPSIRCLIRTSKFPLKSGSEYS--SLYPLLFIVSVG 180
           ++L  I+CC +   PI+ SIR L  TSK   K+    S  +L+   +IV +G
Sbjct: 316 FLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLSKLTLFRQFYIVVIG 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,253
Number of Sequences: 28952
Number of extensions: 217568
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)