Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E15
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54KK6 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  
UniRef50_A7D1D6 Cluster: UspA domain protein; n=1; Halorubrum la...    32   6.0  

>UniRef50_Q54KK6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 421

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = -2

Query: 333 IKLLVIVSQSLEFFFNPLSTNL---GFTPAFHCLPIVSFLWVIDILNEFNIPSYNIYIS 166
           +KLL+++   +  FFN ++ NL     + +    P++S ++ + I N+ +I   N+YI+
Sbjct: 1   MKLLIVLILIISLFFNNINCNLLGKSLSKSNQVAPLISSVFTLLITNDGDIDYLNVYIN 59


>UniRef50_A7D1D6 Cluster: UspA domain protein; n=1; Halorubrum
           lacusprofundi ATCC 49239|Rep: UspA domain protein -
           Halorubrum lacusprofundi ATCC 49239
          Length = 732

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 25/75 (33%), Positives = 36/75 (48%)
 Frame = -2

Query: 357 ISFFAKDSIKLLVIVSQSLEFFFNPLSTNLGFTPAFHCLPIVSFLWVIDILNEFNIPSYN 178
           + F + DS+  +++V   L F   PL         FH   +VSF  V+ +  E+NIP Y 
Sbjct: 187 VGFASTDSVSRMLVVY--LAFLAIPLGD------LFHV--VVSFTEVLYLFFEYNIPLYG 236

Query: 177 IYISLYQ*VYKLDIP 133
             ISLY  +    IP
Sbjct: 237 AEISLYSGIVGFVIP 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,307,872
Number of Sequences: 1657284
Number of extensions: 7672722
Number of successful extensions: 16656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16651
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)