Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E15
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    28   0.87 
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.0  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   2.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.1  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   6.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.1  

>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = -2

Query: 357 ISFFAKDSIKLLVIVSQSLEFFFNPLSTNLGFTPAFHCLPIVSFLWVIDILNEFNIPSYN 178
           +SFFA++  K+  IVS+ + FF         + P  +  P V F+   ++L   +    +
Sbjct: 237 MSFFAENPRKVENIVSKQIAFF------RKLYLPLLYAEPGVHFIESSEVLKSMDPSDNS 290

Query: 177 IYISLYQ*VYKLDIPSSLLKRL 112
            Y+S +Q + K D  S LL  L
Sbjct: 291 RYLSFHQNITK-DSISRLLNGL 311


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = -2

Query: 348 FAKDSIKLLVIVSQSLEFFFNPLSTNLGFTPAFHCLPIVSFLWVIDILNEFNIPSYNIYI 169
           FA  + + L+I S   +F F+P++ ++  TP+          ++I ++    +  Y +  
Sbjct: 686 FAAATTEGLMIYSLYNDFLFDPINLDMDITPSTTLTMCAEGEFLISLVMALRLNEYKVVQ 745

Query: 168 SLYQ*VYKLDI 136
            +Y+ +   D+
Sbjct: 746 KVYESIPITDV 756


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 263 KPRLVLKGLKKNSNDCETMTNSFMESFAKKLIKPF 367
           KP LV K LK   N C T+   F  + A+ L   F
Sbjct: 531 KPNLVSKNLKSFLNSCLTIDTIFRATAAELLTHSF 565


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 94  VMKHGKLSKRNIFSYLKIIRTHTSV 20
           V+K+ KLS  N++ YL   R  T +
Sbjct: 869 VLKNPKLSSSNVYDYLPAFRLLTKI 893


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 263 KPRLVLKGLKKNSNDCETMTNSFMESFAKKLIKP 364
           KPR  L+  + +SND  T+  SF  + + K+  P
Sbjct: 831 KPRESLEKTRVSSNDNRTLAKSFETTESNKMSTP 864


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 269 RLVLKGLKKNSNDCETMTNSFMESFAKKLIK 361
           R+   GLK+NS++ + +    M S  KKL+K
Sbjct: 506 RIKQMGLKENSDEGQLVPREEMVSVLKKLLK 536


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 167 AYINKYISLISLAVC*NVFHNNTSSNETRKAQ*TKYF 57
           ++ ++  ++I LAV    FHN+T++ ET   Q  +YF
Sbjct: 210 SFRSRLFNIIGLAV---QFHNHTTAAETNIIQNLQYF 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,915
Number of Sequences: 5004
Number of extensions: 38218
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)