Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E15
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    27   6.1  
11_03_0131 + 10497674-10499617                                         27   6.1  

>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -2

Query: 378 LIQKKGLISFFAKDSIKLLVIVSQSLEFFFNPLS 277
           L+  KG++S+F  DS + L +  Q+LE +FN LS
Sbjct: 301 LLNHKGVVSYFRIDSSRSLNL--QTLETWFNILS 332


>11_03_0131 + 10497674-10499617
          Length = 647

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 315 VSQSLEFFFNPLSTNLGFTPAFHCLPIVS 229
           +   L F  + +S   GF   F CLPI+S
Sbjct: 69  IRSHLRFCLDSISGRRGFKKGFRCLPIIS 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,010,345
Number of Sequences: 37544
Number of extensions: 170662
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)