Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E15
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              27   8.3  

>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 416 FLKCNHYRNRVKYKLFT 466
           F + NHY NRV+YK FT
Sbjct: 377 FGRMNHYENRVEYKGFT 393


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 278 LKGLKKNSNDCETMTNSFMESFAKKL 355
           L  LKK S+DC   T+SF+    K+L
Sbjct: 521 LLNLKKRSSDCAPGTSSFLTDIPKQL 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,501
Number of Sequences: 59808
Number of extensions: 216383
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)