Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E15
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031045-1|AAH31045.1|  206|Homo sapiens BTG4 protein protein.         31   1.6  
AJ271351-1|CAB69821.1|  223|Homo sapiens PC3B protein protein.         31   1.6  
BC113611-1|AAI13612.1|  797|Homo sapiens protocadherin beta 11 p...    29   6.5  
BC112132-1|AAI12133.1|  797|Homo sapiens protocadherin beta 11 p...    29   6.5  
AF217747-1|AAK51615.1|  797|Homo sapiens protocadherin-beta11 pr...    29   6.5  
AF152490-1|AAD43751.1|  797|Homo sapiens protocadherin beta 11 p...    29   6.5  
AB209225-1|BAD92462.1|  799|Homo sapiens protocadherin beta 11 p...    29   6.5  
Z33905-1|CAA83954.1|  412|Homo sapiens 43kD Acetylcholine recept...    29   8.6  

>BC031045-1|AAH31045.1|  206|Homo sapiens BTG4 protein protein.
          Length = 206

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 130 QFVKTSFIITRLVMKHGKLSKRNIFSYLKIIRT 32
           +   T F +TRLV KH KLSK+ I  + + + T
Sbjct: 4   EIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMT 36


>AJ271351-1|CAB69821.1|  223|Homo sapiens PC3B protein protein.
          Length = 223

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 130 QFVKTSFIITRLVMKHGKLSKRNIFSYLKIIRT 32
           +   T F +TRLV KH KLSK+ I  + + + T
Sbjct: 4   EIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMT 36


>BC113611-1|AAI13612.1|  797|Homo sapiens protocadherin beta 11
           protein.
          Length = 797

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 FNISITHKNETIGKQWKAGVKPRLVLKGLKKNSNDCETMTNSFMESF 343
           + + +T  +ET   ++   V P +  KGL KNS +  T  NSF  +F
Sbjct: 751 YEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRNSFGFNF 797


>BC112132-1|AAI12133.1|  797|Homo sapiens protocadherin beta 11
           protein.
          Length = 797

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 FNISITHKNETIGKQWKAGVKPRLVLKGLKKNSNDCETMTNSFMESF 343
           + + +T  +ET   ++   V P +  KGL KNS +  T  NSF  +F
Sbjct: 751 YEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRNSFGFNF 797


>AF217747-1|AAK51615.1|  797|Homo sapiens protocadherin-beta11
           protein.
          Length = 797

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 FNISITHKNETIGKQWKAGVKPRLVLKGLKKNSNDCETMTNSFMESF 343
           + + +T  +ET   ++   V P +  KGL KNS +  T  NSF  +F
Sbjct: 751 YEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRNSFGFNF 797


>AF152490-1|AAD43751.1|  797|Homo sapiens protocadherin beta 11
           protein.
          Length = 797

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 FNISITHKNETIGKQWKAGVKPRLVLKGLKKNSNDCETMTNSFMESF 343
           + + +T  +ET   ++   V P +  KGL KNS +  T  NSF  +F
Sbjct: 751 YEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRNSFGFNF 797


>AB209225-1|BAD92462.1|  799|Homo sapiens protocadherin beta 11
           precursor variant protein.
          Length = 799

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 FNISITHKNETIGKQWKAGVKPRLVLKGLKKNSNDCETMTNSFMESF 343
           + + +T  +ET   ++   V P +  KGL KNS +  T  NSF  +F
Sbjct: 753 YEVCLTGGSETNEFKFLKPVIPNIQAKGLGKNSEENSTFRNSFGFNF 799


>Z33905-1|CAA83954.1|  412|Homo sapiens 43kD Acetylcholine
           receptor-associated protein (Rapsyn) protein.
          Length = 412

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 364 RLNKFFCKGFHKTVSHCFTIVGIFF*PLEH*PGFYASFPLFAYCLIFMGNRYI 206
           R N+  C+ FHKT+S+C T +G+        PG  A   L     + MGN ++
Sbjct: 91  RSNEKLCE-FHKTISYCKTCLGV--------PGTRAGAQLGGQVSLSMGNAFL 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,358,507
Number of Sequences: 237096
Number of extensions: 989777
Number of successful extensions: 1501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)