Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E14
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   1.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   3.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   6.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.5  

>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 448 FTGHLSDSWRLLIDESILRHIQKCTLEEANR-QLGHNNWV--LTLEQLESFIAICYARGA 278
           F   LSDS  ++ID++ L+ I   +L+     Q+ +N ++  +T+E LES   I  +  +
Sbjct: 132 FNAGLSDSDSVVIDDTQLQAIDGISLDSVTTFQVTNNRYIQEITMEGLESAQNIQISANS 191

Query: 277 YGV 269
            GV
Sbjct: 192 KGV 194


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 282 VHTELWSKTWGIHFFSKVMPRDRFKEIMKFLRFDHRSERSLRLQ 151
           VH+ L +  W +++FS+  P + +  + + LR + R    + +Q
Sbjct: 638 VHSNLLNPEWLMNYFSRFSPDEVYDYLREMLRSNLRQNLQIVVQ 681


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -1

Query: 556 DGTSW---TPQMGHTQSGRRARHNIITEQAGPTSNARRNFTGHLSDSW 422
           D T W   TP +  +    R+ H++   Q     +   N TG LSD W
Sbjct: 229 DETDWSWETPFLHSSSPPPRSNHSVTLVQGKIFVHGGHNDTGPLSDLW 276


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 150 QDKFALISDVWKKFIENCLSC 88
           +D+F   SD+WK F E C  C
Sbjct: 125 RDQFISRSDMWKLFRELCGKC 145


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 195 FLRFDHRSERSLRLQQDKFALISDVWKKFIENCLSCYKPGENVTVDEQLFS 43
           FLRF+ R   + R+   +   +    K F  NCL      + + VD  L S
Sbjct: 395 FLRFEKRLNGNNRMHIKQLIKVVYNLKSFFLNCLETNTNSKVINVDSLLVS 445


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 315 WKVLSLYVMLEVHTELWSKTWGIHFFSKVMPRDRF 211
           +K+ +L  +LE   E W +    H FS+V   D+F
Sbjct: 458 FKMNALLFILEQGFESWFRDSSDHIFSRVKDDDKF 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,172
Number of Sequences: 5004
Number of extensions: 50727
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)