Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E14
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0563 - 23895573-23895614,23896330-23896390,23896901-238970...    31   0.70 
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    31   0.93 
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165...    29   2.8  
12_01_0493 + 3917257-3917769,3917842-3918067,3918460-3918527,391...    29   3.8  
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668...    28   5.0  
05_07_0133 - 27908427-27908555,27908705-27908827,27908915-279090...    28   5.0  
04_01_0127 + 1368763-1369276,1385539-1385742,1386221-1386444,138...    27   8.7  

>02_04_0563 -
           23895573-23895614,23896330-23896390,23896901-23897025,
           23897217-23897302,23898052-23898167,23898274-23898336,
           23898451-23898530,23898751-23898871,23899419-23899501,
           23900081-23900155,23900436-23900936
          Length = 450

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 206 SLNLSRGITFEKKCIPHVLLHNSVCTSSITYSDK 307
           SL+++RG+ +  +C P  ++H ++ T SI   D+
Sbjct: 282 SLDIARGLNYLHECKPEPIIHGNLSTKSIVRDDE 315


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 598 SSEDSEFQDLITSIDGTSWTPQMG-HTQSGRRARHNIITEQAG 473
           +  D +FQ ++  ID T W P+   H +S     +++ T QAG
Sbjct: 572 NESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAG 614


>02_01_0252 -
           1657268-1657692,1657727-1658445,1658761-1659089,
           1659223-1659375,1659430-1659561,1659748-1659852,
           1660020-1660193,1660283-1660352,1660458-1660639,
           1660738-1660847,1660948-1661052,1661153-1661231,
           1662128-1662168,1662283-1662358,1662455-1662589
          Length = 944

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 31  SNLSRKQLFVYCNVFSWLVAR*AVLNEFLPNV 126
           + L R++   Y N+F W++A  AV+++ +P V
Sbjct: 115 AELCREEYPHYVNIFLWIIAELAVISDDIPEV 146


>12_01_0493 +
           3917257-3917769,3917842-3918067,3918460-3918527,
           3919251-3919574,3919691-3920128
          Length = 522

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 529 GHTQSGRRARHNIITEQAGPTSNARRNFTGHLSDSWRLLIDESILRHIQKCTL 371
           G T SG+R R  ++TE+ G       N TG +   W L      L+ I +CTL
Sbjct: 471 GSTSSGKRKRTPVVTEEEGAFLT---NMTGAICMRWLL---PYALQPILRCTL 517


>09_03_0167 +
           12965030-12965356,12966100-12966387,12966704-12966826,
           12967229-12967611,12967863-12968190,12968324-12968353,
           12968837-12968989,12969510-12969815
          Length = 645

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 215 LSRGITFEKKCIPHVLLHNSVCTSSITYSDKT 310
           L+R    +  CIPHVL  N V  ++ T S KT
Sbjct: 102 LARPSLVQAACIPHVLTTNDVIVAAETGSGKT 133


>05_07_0133 -
           27908427-27908555,27908705-27908827,27908915-27909022,
           27909109-27909198,27909304-27909363,27909454-27909516,
           27909604-27909678,27910337-27910402,27910607-27910786
          Length = 297

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 522 LKVVVEHGTIS*LSKQGLPQMLEEILRDICQTHGG 418
           L V V H T+S L +  L ++LEE   DI QT GG
Sbjct: 165 LSVTVPH-TLSLLDQVRLAELLEEEGADIIQTEGG 198


>04_01_0127 +
           1368763-1369276,1385539-1385742,1386221-1386444,
           1386520-1386707,1394955-1394970
          Length = 381

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 556 DGTSWTPQMGHTQSGRRARHNIITEQAGPTSNARRNFTGHLSD 428
           DG++   Q  H+Q    A HN++  Q+G   N   N    ++D
Sbjct: 113 DGSAQENQGNHSQGVDYAVHNVLINQSGVLVNTLSNMMKSIAD 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,038
Number of Sequences: 37544
Number of extensions: 289588
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)