Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E14
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa...    30   1.0  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    28   5.4  
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    28   5.4  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    28   5.4  
At5g23260.2 68418.m02722 MADS-box protein, putative                    27   7.2  
At5g23260.1 68418.m02721 MADS-box protein, putative                    27   7.2  

>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           SP|P40345 Phospholipid:diacylglycerol acyltransferase
           (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 671

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 553 GTSWTPQMGHTQSGRRARHNIITEQAGPTSNARRN 449
           G  W+P+ GHT  G++ ++N    +AG    ++++
Sbjct: 362 GLDWSPEKGHTCCGKKQKNNETCGEAGENGVSKKS 396


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 366 KLTGN*DTTTGY*LWNNWK-VLSLYVMLEVHTELWSKTWGIHFFSKVMP 223
           K++ + D  T +  W  WK  LS +  L V  +L  + WG H F  VMP
Sbjct: 337 KISSHLDWQTHFDKW--WKGELSNFEYLLVLNKLAGRRWGDHTFHPVMP 383


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 183 DHRSERSLRLQQDKFALISDVWKKFIENCLSCYKPGENVTVDEQLFSTKVR 31
           D+    +L  QQD    +  +     E  + CY+P ++  + + LFS  +R
Sbjct: 155 DYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDILFSRNLR 205


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 183 DHRSERSLRLQQDKFALISDVWKKFIENCLSCYKPGENVTVDEQLFSTKVR 31
           D+    +L  QQD    +  +     E  + CY+P ++  + + LFS  +R
Sbjct: 155 DYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDILFSRNLR 205


>At5g23260.2 68418.m02722 MADS-box protein, putative 
          Length = 252

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 189 RFDHRSERSLRLQQDKFALISDVWKKFIENCLSCYKPGE 73
           R+ H    ++  QQ         +++FIE  L CYKPGE
Sbjct: 168 RWLHEHRAAMEFQQAGIDTKPGEYQQFIEQ-LQCYKPGE 205


>At5g23260.1 68418.m02721 MADS-box protein, putative 
          Length = 247

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 189 RFDHRSERSLRLQQDKFALISDVWKKFIENCLSCYKPGE 73
           R+ H    ++  QQ         +++FIE  L CYKPGE
Sbjct: 163 RWLHEHRAAMEFQQAGIDTKPGEYQQFIEQ-LQCYKPGE 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,211
Number of Sequences: 28952
Number of extensions: 252159
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)