Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E13
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    29   0.75 
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.3  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   3.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.0  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 179 SSETSEEKPRSLRSYNTERRVI 114
           SSETS EKPRS++   T +R +
Sbjct: 96  SSETSSEKPRSVKKPTTRKRKV 117


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 285 LSNEDCGSIFKNDGKLNDVYC--AHSYAFICEKEIKT*LCFKMYVTIIFVKLIVGYSFLI 458
           L+N +  S+++N  + NDV+     SYA +  K I + +C  +YV      +   Y F+I
Sbjct: 384 LTNWNTTSVYEN--QKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPYRFMI 441


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 219 IFNQTLEEAGFSVWSPNEPNNALSNEDCGSIFKNDG 326
           IF+ TL    F+VWSPN      S  D   I K +G
Sbjct: 179 IFSGTLSYI-FNVWSPNGKKGTASFSDIVKIAKQNG 213


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 154 GFSSLVSELINQSEIVRKFLKQSSIKR*KKRDSASGHQTNPTMRSRTKTAALYSRTT 324
           G S+L++   + S  V   L++SSI       S+S     PT+ S T T +L+ +TT
Sbjct: 413 GVSTLLASPTSSSTFVTSLLRRSSID--GSASSSSASLAVPTVSSST-TGSLHYKTT 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,676
Number of Sequences: 5004
Number of extensions: 48238
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)