Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E13
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...    30   1.8  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    27   9.6  

>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 201 YYFRLVYQLGNQRRKTTKLEIL*HGAPSYRISSFVFVKFLTAN 73
           Y+FR+ YQ  + R+ T +LE++  G+ ++  S+ +F      N
Sbjct: 194 YFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKN 236


>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
            22180939-22181169,22181250-22181805,22181896-22182312,
            22182405-22183216,22183653-22183738,22184464-22184534,
            22184553-22185573,22186018-22186062,22186252-22186326,
            22186797-22186871
          Length = 1557

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 155  PRSLRSYNTERRVIGSQASCSLNS*QLTFPLLNSIPL--DERSLLD 24
            P S   Y  ++   G  ++CS    QLT   L+ IPL  D+ + LD
Sbjct: 1398 PDSSSIYKRQKTSEGKYSTCSFGDGQLTSKCLSKIPLPADQHTSLD 1443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,647,307
Number of Sequences: 37544
Number of extensions: 243147
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)