Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E13
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28450.1 68417.m04071 transducin family protein / WD-40 repea...    31   0.86 
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    30   1.1  
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    30   1.1  
At3g11350.1 68416.m01380 hypothetical protein                          29   3.5  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   6.1  

>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
           family protein SOF1 (involved in rRNA processing)
           protein-yeast
          Length = 442

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 WSPNEPNNALSNEDCGSIFKNDG-KLNDVYCAH 353
           W+P EP N  +  + GS +  DG KL++  C H
Sbjct: 243 WNPMEPMNLTAANEDGSCYSFDGRKLDEAKCVH 275


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 478 NVISRLIMRKLYPTINLTKIIVTYILKQSYVFISFSHIK-----AYECAQ*TSFSFPSFL 314
           N ++R I R  YPT+++       I+  + ++++ SH++      Y C    SF FP + 
Sbjct: 40  NCLAR-ISRSYYPTLSIVSKSFRSIISSTELYVARSHLRNTEECVYVCLSDKSFEFPKWF 98

Query: 313 NI 308
            +
Sbjct: 99  TL 100


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 478 NVISRLIMRKLYPTINLTKIIVTYILKQSYVFISFSHIK-----AYECAQ*TSFSFPSFL 314
           N ++R I R  YPT+++       I+  + ++++ SH++      Y C    SF FP + 
Sbjct: 40  NCLAR-ISRSYYPTLSIVSKSFRSIISSTELYVARSHLRNTEECVYVCLSDKSFEFPKWF 98

Query: 313 NI 308
            +
Sbjct: 99  TL 100


>At3g11350.1 68416.m01380 hypothetical protein
          Length = 359

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 188 SRK*YESF*NNLQSNARRSGIQRLVTKRTQQCALERRLRLYIQE 319
           + K +ES   NL+  +  + + R   KR+++  L+R  R++IQE
Sbjct: 95  AEKYFESIPENLRGESLYTALLRSYAKRSEKKYLDRASRIHIQE 138


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 231 TLEEAGFSVWSPNEPNNALSNEDCGSIFKNDGKLN 335
           T+EE+G  VW  ++PN   S++   +I   +G L+
Sbjct: 561 TIEESGIHVWDFSQPNKKASSQKPKTIRSYEGFLS 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,785,989
Number of Sequences: 28952
Number of extensions: 224531
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)