Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E11
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    28   1.6  
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674...    27   2.7  
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455...    27   3.6  
07_01_0869 + 7214572-7214708,7214777-7214960                           27   3.6  
02_05_0927 - 32795254-32795465,32795552-32795606                       27   3.6  
05_02_0130 - 6906540-6907522,6908542-6908737                           26   4.7  
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    26   6.3  
04_03_0143 + 11793991-11794099,11794388-11794533                       26   6.3  
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626...    25   8.3  

>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 RHGDSTCPASCSNVRDTD 170
           RHG S+ P S SNVRD D
Sbjct: 148 RHGQSSEPQSSSNVRDED 165


>02_02_0097 -
           6746934-6747005,6747372-6748325,6748421-6748435,
           6748592-6748984
          Length = 477

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 274 IVSFPNTSSVVVS*WKALSSPQHRATCIKTYRTGGSVSRTF 152
           ++S P+TSS   +     SS +HRA  I++ R G   +  F
Sbjct: 304 VISSPSTSSSAAALHAPWSSVKHRAQIIRSPRRGTPTTTAF 344


>12_01_0561 +
           4550119-4550265,4550716-4550791,4551601-4551668,
           4551951-4552039,4552136-4552313,4553096-4553229,
           4553307-4553520,4553601-4553785,4553930-4554025,
           4554105-4554231
          Length = 437

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 242 GKLMEGTLFSTTSSDLHKN 186
           G+LMEG  FS+  +++HKN
Sbjct: 377 GELMEGPKFSSLVTEMHKN 395


>07_01_0869 + 7214572-7214708,7214777-7214960
          Length = 106

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 175 GGSVSRTFEQLAGQVESPWREISHQVRNTI 86
           GG+ SR  ++  G+  +PW E+   +R  I
Sbjct: 20  GGATSRVAQRGRGKDAAPWEEVMQMLRKQI 49


>02_05_0927 - 32795254-32795465,32795552-32795606
          Length = 88

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 262 PNTSSVVVS*WKALSSPQHRATCIKTYRTGGS 167
           PN SSV+++  KA S+ +  A C + Y+  G+
Sbjct: 32  PNCSSVILNPGKACSAAKCNADCSRMYKGTGT 63


>05_02_0130 - 6906540-6907522,6908542-6908737
          Length = 392

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 169 IHQFDKFLCKSLDVVEKRVPSI 234
           IH  DK +C+  ++++K +PS+
Sbjct: 76  IHLDDKLICEHPEIIDKHMPSL 97


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
 Frame = +1

Query: 106 EKSLATGIQLALPAVQMFETPIHQ-----FDKF----LCKSLDVVEKRVPSINLPPQTM 255
           + +LA G+  A+   Q+ +  IHQ      D F    L  +L    +RVPS +LPPQ +
Sbjct: 358 QANLAQGLTAAIGQPQLQQNWIHQEGNGLSDVFSGSSLTNTLSSTLQRVPSSSLPPQEL 416


>04_03_0143 + 11793991-11794099,11794388-11794533
          Length = 84

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 232 WKALSSPQHRATCIKTYRTGGSVSRTFEQLA 140
           W+A S   H ++  +  R GG+ + TF +++
Sbjct: 15  WRARSDASHNSSAKRRRRGGGAAATTFGEIS 45


>01_06_0933 -
           33161687-33162205,33162290-33162376,33162459-33162695,
           33162778-33162886,33162997-33163313,33163398-33163607,
           33165380-33165901
          Length = 666

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 161 RHRSTSSISFYASRSMLWRRECLPSTYHHRRCIRKRDNTFSVG 289
           R  ST+++      S L+  E LP  YH  R +R+  NT+  G
Sbjct: 186 RAGSTTAVMTVLLVSFLF--EYLPKIYHAVRLLRRMQNTYVFG 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,813
Number of Sequences: 37544
Number of extensions: 207756
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)