Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E11
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.13
SB_53501| Best HMM Match : YTV (HMM E-Value=7.8) 30 0.30
SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) 27 2.1
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 3.7
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_40952| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 26 6.5
SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) 26 6.5
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 26 6.5
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_13586| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 68 NPTL*SDGISHLVRNLSPRGFNLPCQLFKCSRHRSTSSISFYASRSMLWRRECL--PSTY 241
NPTL + SH++ P G LP ++ S S S+S R LW E L P +
Sbjct: 250 NPTLMFNKDSHMILGGKPDGVTLPPEIDTPSYVGSIDSLSINHYRVGLWNAENLIRPQMF 309
Query: 242 HHRRCIRK 265
+ R R+
Sbjct: 310 YDRLAFRE 317
>SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)
Length = 128
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Frame = +1
Query: 10 IPIVESGIDVTEKLYFRIKESNPIIRWYFSLGEKSLA---------------TGIQLALP 144
+P+V + ++ ++Y +KE N + + GE +L+ T LA P
Sbjct: 33 LPVVMAAMEQLSQIYGNVKERNAVTKKVCEAGESTLSVATAASKPLIQKATNTAFTLAKP 92
Query: 145 AVQMFETPIHQFDKFLCKSLDVVEKRVPSINLPP 246
+ P+ D ++L VE++ P I P
Sbjct: 93 VIGEVNDPVSTIDNVASETLAKVEEKFPVITKTP 126
>SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 194 ASRSMLWRRECLPSTYHHRRCIRKRDNTFSV 286
A R + WRR+ LP H R R+R N++ +
Sbjct: 405 ARRFVSWRRQRLPPFVHRRGKKRRRGNSYRI 435
>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
Length = 414
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 104 VRNLSPRGFNLPCQLFKCSRHRSTSSISFYASRSMLWRRECLPSTYHHR 250
V+++ + +PC++ KC+ + S + AS + LP+ + H+
Sbjct: 278 VKSMEGQKRKIPCEVVKCTFNGEEQSFTQMASSGAKPKANSLPARFRHK 326
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 194 ASRSMLWRRECLPSTYHHRRCIRKRDNTFSVGR 292
AS ++ ECL Y C +KRD TF++G+
Sbjct: 628 ASDGRTYQNECLAKKY---ACEKKRDLTFTLGK 657
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 119 PRGFNLPCQLF-KCSRHRSTSSISFYASRSMLWRRECLPSTYH 244
P G +LP + KC+RH SSI + R L T H
Sbjct: 1249 PEGRHLPVRFVGKCARHGDESSIVVRDREEAAYLRNLLAGTVH 1291
>SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +2
Query: 119 PRGFNLPCQLFKCSRHRSTSSISFYASRSMLWRRECLPSTYH 244
PRG C KC+RH SSI + L T H
Sbjct: 365 PRGSRSRCPFRKCTRHGDESSIVVRDREEAAYLTNLLAGTDH 406
>SB_40952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 88 WYFSLGEKSLATGI 129
WYFS G++SLA GI
Sbjct: 109 WYFSPGKRSLAMGI 122
>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
Length = 839
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 187 TYRTGGSVS--RTFEQLAGQVESPWREISHQVRNTIG 83
+Y T GS+ F L PWR+ HQ ++T G
Sbjct: 786 SYYTAGSIMLLAAFVPLLQYCFKPWRQTKHQQKSTNG 822
>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
Length = 193
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 167 RSTSSISFYASRSMLWRRECLPSTYHHRRCIRKRD 271
RS S+ +++ W++ +PST H I +D
Sbjct: 89 RSVRSVRYFSVSLSSWQKVAVPSTIHCDHLIEAKD 123
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 274 IVSFPNTSSVVVS*WKALSSPQHRAT 197
+VSF TS + W+A SS HRA+
Sbjct: 879 LVSFMWTSIIAYDTWRAFSSNGHRAS 904
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 104 VRNLSPRGFNLPCQLFKCSRHR 169
++ L PR +LPCQ +CS +R
Sbjct: 557 IKKLVPRFSDLPCQGIECSLNR 578
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 83 SDGISHLVRNLSPRGFNLPCQLFKCSRH 166
+ I+HL++N+S G NL + SRH
Sbjct: 2221 NSSINHLLKNISNDGLNLRRPILFLSRH 2248
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 202 LDVVEKRVPSINLPPQTMYSETR 270
+D E+R PS PPQ +ET+
Sbjct: 1449 IDESERREPSATTPPQNAQTETK 1471
>SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 183 IELVDRCLEHLNSWQGKLNPRGERFL 106
++ ++ CL+ L +W LN R FL
Sbjct: 37 LDQLNTCLDKLENWNDSLNSRMREFL 62
>SB_22346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 25.4 bits (53), Expect = 8.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 218 RECLPSTYHHRRCIRKRDN 274
+ C+P+ H+ C+ KRD+
Sbjct: 379 KSCVPTLMHYDACVAKRDS 397
>SB_13586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 29 ELTSPKNCTSESRNPTL*SDGISHLVRNLSPRGFNLPCQLFKCS 160
EL P+ C GIS+ VR+LSP L L+ S
Sbjct: 110 ELLCPRLCLKPDLTLVSEGSGISYAVRSLSPNATTLCINLWSNS 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,945
Number of Sequences: 59808
Number of extensions: 230682
Number of successful extensions: 648
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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