Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E11
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden...    29   0.76 
At2g39870.1 68415.m04899 expressed protein                             29   0.76 
At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)...    26   4.1  
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr...    26   4.1  
At5g25500.1 68418.m03034 expressed protein ; expression supporte...    26   5.4  
At3g14610.1 68416.m01850 cytochrome P450, putative similar to GB...    26   5.4  
At2g27070.1 68415.m03252 two-component responsive regulator fami...    26   5.4  
At5g12420.1 68418.m01460 expressed protein                             25   7.1  
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ...    25   7.1  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    25   9.4  
At4g18680.1 68417.m02763 hypothetical protein weak similarity to...    25   9.4  
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ...    25   9.4  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    25   9.4  
At2g26540.1 68415.m03184 uroporphyrinogen-III synthase family pr...    25   9.4  
At1g16445.1 68414.m01967 methylase-related similar to YtqB (GI:2...    25   9.4  

>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
           identical to non-phototropic hypocotyl 3 [Arabidopsis
           thaliana] gi|6224712|gb|AAF05914, PMID:10542152
          Length = 746

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 183 IELVDRCLEHLNSWQGKLNPRGERFLTK*EIPSDYRVGFLDSEVQFFGDVNS*FY 19
           +++V RC E + +W+   NP+G R+    + PS     F  S  ++    +S FY
Sbjct: 182 LQIVRRCSESI-AWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFY 235


>At2g39870.1 68415.m04899 expressed protein
          Length = 330

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 14  PS*NQELTSPKNCT-SESRNPTL*SDGISHLVRNLSPRGFNLPCQLFKCSRHRSTSSIS 187
           PS +   TSP + T +E  +     D ++ L R L+P    LP  LFK    R  ++ S
Sbjct: 42  PSFSPGFTSPGDSTETEDESSDDEEDFLAGLTRRLAPSTQRLPSPLFKSEEKRQVAATS 100


>At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)
           identical to pentacyclic triterpene synthase
           [gi:6650208] [PMID:11247608]
          Length = 766

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 184 YRTGGSVSRTFEQLAGQVESP 122
           Y TGGSV + F  LA  VE P
Sbjct: 368 YITGGSVPKAFHMLACWVEDP 388


>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1049

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 125 PVARDFSPSEKYHRIIGLDSLILKYNFSV 39
           PV +      KYH I+G+ +LI+  +F +
Sbjct: 587 PVTKQQHKQRKYHLILGIAALIVSLSFLI 615


>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 146 LFKCSRHRSTSSISFYASRSMLWRRECLPSTY 241
           +  C R  S SS+SF   +S  W R  +P+ Y
Sbjct: 202 ILSCLRFLSESSVSFEVEKSTSWMRP-VPARY 232


>At3g14610.1 68416.m01850 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 512

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 46  KLYFRIKESNPIIRWYFSLGEKSLATGIQLALPAV 150
           +LY  + +   ++     LGE +L  GIQ+ LP +
Sbjct: 381 RLYPPVAQLKRVVNKEMKLGELTLPAGIQIYLPTI 415


>At2g27070.1 68415.m03252 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 575

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 35  TSPKNCTSESRNPTL*SDGISHLVRN 112
           T  KNC+S+S   T+ S  +SH+  N
Sbjct: 173 TKKKNCSSKSDTRTVNSTNVSHVSTN 198


>At5g12420.1 68418.m01460 expressed protein
          Length = 480

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 107 SPSEKYHRIIGLDSLILKYNFSVTSIPDSTMGM 9
           +P   YHRII LD + L  N    +I D   G+
Sbjct: 230 NPKRFYHRIISLDDIKLIKNAMNMTINDVLFGI 262


>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
            carbohydrate-binding domain-containing protein similar to
            GB:AAD27896 to endoxylanases gi|1255238
            (Thermoanaerobacterium thermosulfurigenes), gi|1813595
            (Hordeum vulgare) and others ; contains Pfam profiles
            PF00331: Glycosyl hydrolase family 10, PF02018:
            Carbohydrate binding domain
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 156  HLNSWQGKLNPRGERFLTK*EIPSDYRVGFLDSEVQFFGDVNS*FYDG 13
            HL +  G++N  G+RFL   EI  ++ + F+D E++  G +    Y G
Sbjct: 988  HLVNADGEVNEAGKRFL---EIKREW-LSFVDGEIEDGGGLEFRGYHG 1031


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 184 YRTGGSVSRTFEQLAGQVESP 122
           Y TGG+V + F  LA  VE P
Sbjct: 366 YITGGAVPKVFHMLACWVEDP 386


>At4g18680.1 68417.m02763 hypothetical protein weak similarity to
           tumor-related protein [Nicotiana glauca x Nicotiana
           langsdorffii] GI:688423
          Length = 235

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 149 FKCSRHRSTSSISFYASRSMLWRRECLPSTY 241
           ++C  H    S +     SMLW   C PS++
Sbjct: 48  YRCCAHYFAPSWNTPIENSMLWMGGCRPSSF 78


>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
           nearly identical to SCARECROW [Arabidopsis thaliana]
           GI:1497987
          Length = 653

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 294 VRPTENVLSRFRIHRLWW*VDGRHSLLHNIERLA*KLIELVDRCLEHLNSWQGK 133
           VR  E V   +  H L+         L  ++RLA K++ +V++ L H  S+ G+
Sbjct: 480 VRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGR 533


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 19  VESGIDVTEKLYFRIKESNPIIRWY 93
           VE+ +D+ EK+Y  +   +PI++ Y
Sbjct: 778 VETLLDLLEKIYIALDHYSPILKHY 802


>At2g26540.1 68415.m03184 uroporphyrinogen-III synthase family
           protein contains Pfam PF02602: uroporphyrinogen-III
           synthase; weak similarity to Porphyrin biosynthesis
           protein HEMD)) (Uroporphyrinogen III methylase) (UROM);
           Uroporphyrinogen-III synthase (EC 4.2.1.75)
           (Swiss-Prot:Q59294) [Clostridium josui]
          Length = 321

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 274 IVSFPNTSSVVVS*WKALSSPQHRATCIKTYRTGGSVSRTFEQ 146
           I++ P   SV +  WK  SSP+     ++    G   +R FE+
Sbjct: 120 IITSPEAGSVFLEAWKTASSPE-----VQIGVVGAGTARVFEE 157


>At1g16445.1 68414.m01967 methylase-related similar to YtqB
           (GI:2952524) [Streptococcus mutans]
          Length = 274

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 96  LTW*EISRHGDSTCPASCSNVRDTDPPVR*VFMQVARCCG 215
           + W ++ + GD+   A+C N  DT   ++ V      C G
Sbjct: 89  VVWEQVIQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGG 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,767,890
Number of Sequences: 28952
Number of extensions: 164832
Number of successful extensions: 444
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)