Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E09
(255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281 29 0.68
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 2.1
03_01_0600 - 4419917-4419967,4420081-4420287,4420386-4420560,442... 27 2.8
10_01_0017 - 218188-218261,219262-219379,220348-220932,220996-22... 25 6.4
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 25 6.4
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408 25 6.4
10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128 25 8.4
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450... 25 8.4
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 25 8.4
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 25 8.4
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526... 25 8.4
>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
Length = 518
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 36 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 167
NR+ R L++ +++ E I + CMKK+ ++N L +S
Sbjct: 39 NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 111 PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 236
PICM + MC V HL+H + P C LT
Sbjct: 61 PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102
>03_01_0600 -
4419917-4419967,4420081-4420287,4420386-4420560,
4420677-4420708,4421179-4421280,4421406-4421552
Length = 237
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 6 SYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRII 146
+Y R+ RK+ + R L+ + + +TP MK+K +RII
Sbjct: 11 AYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRII 57
>10_01_0017 -
218188-218261,219262-219379,220348-220932,220996-221163,
221331-221333
Length = 315
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 18 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQ 137
Y K NS RM ++ + + E IG+ C+K+K++
Sbjct: 206 YDKENSGRMMFDKDIEIEEDILILEEIGRLAMECLKEKVE 245
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 69 SSWKSIFLPYDSNLPF 22
SSW F+P+D N+ F
Sbjct: 498 SSWARFFVPFDDNITF 513
>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 18 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQ 137
Y K NS RM ++ + + E IG+ C+K+K++
Sbjct: 228 YDKENSGRMMFDKDIEIEEDILILEEIGRLAMECLKEKVE 267
>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
Length = 458
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 18 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQ 137
Y + NS R T++ ++ + E IG+ C+K+K++
Sbjct: 349 YEQENSGRAMFDKDFTIEEEIFILEEIGRLAMECLKEKVE 388
>07_03_1217 -
24943466-24943828,24944207-24944374,24944941-24945009,
24945091-24945197,24945846-24945980,24946090-24946195,
24946758-24946794,24949795-24949832
Length = 340
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 222 GMKVCLSNGLGAAPS 178
G + CL NG G+APS
Sbjct: 267 GNRTCLQNGTGSAPS 281
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 144 INDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFT-KPH 251
+++++KL CSV + NH TST + R T + PH
Sbjct: 266 VSEILKLH-GPCSVGNSNHRTSTTTTLCRRTSSLNPH 301
>03_05_0325 + 23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 72 RQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPS 218
RQL ET+G T IC K N + + +C ++ TP+
Sbjct: 1037 RQLAACETMGSATVICSDKTGTLTTNRMTVVKACICGNTIQVNNPQTPN 1085
>02_05_0389 +
28551649-28551903,28552328-28552402,28552482-28552605,
28552692-28552978,28553147-28553482,28553813-28553869,
28554156-28554382,28554465-28554627,28554912-28554938
Length = 516
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 44 GKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 151
G+ + KAI ++W N D++E E ++ Q+
Sbjct: 436 GRFFCYRCNKAIGGYDHFWNGNCDMFEREQDENPQQ 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,112,354
Number of Sequences: 37544
Number of extensions: 124208
Number of successful extensions: 345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -