Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E09
         (255 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   0.60 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.60 
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   1.8  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   2.4  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          27   3.2  
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)               26   4.2  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 26   4.2  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_12536| Best HMM Match : Oxidored_q2 (HMM E-Value=2)                 26   5.6  
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_39596| Best HMM Match : TTL (HMM E-Value=0)                         25   7.4  
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)                      25   7.4  
SB_10351| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  25   9.8  
SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.8  

>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +2

Query: 17   LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 148
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 168  LAMCSVQHLNHSTSTPSCPVRLTFTKPH 251
            L+ CS+Q L  +T T   P+R++F++PH
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPH 1447


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 32  FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 172
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 14  SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 151
           +LQ+G   S   K+++    A+   G+  Q++ ++ E E  +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 220 HEGVLVEWFRCCTEHMASDNFIRSLIILC 134
           H+GV++      T H  +DNFI    I+C
Sbjct: 93  HQGVVISRDDISTSHEEADNFIVQQAIMC 121


>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
          Length = 947

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 80  NFVGNYWQENADLYEE 127
           N +GNY+  NA++YEE
Sbjct: 491 NDLGNYYNRNAEVYEE 506


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 3    LSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCS 182
            + YS   K  ++  AR   S ++  +   + + KR     KKK++R  N  MKL+  + S
Sbjct: 895  VDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKLVS 954


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 50   KIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRS 154
            KI   +EK    V  +W+   DL E E T D  RS
Sbjct: 3058 KIAIIEEKKQEMVEKFWKSQNDLSEAESTIDSLRS 3092


>SB_15169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   SYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSV 185
           S S     + N      ++  K  +T +E+  K+TP   K++ +R+++DL++      + 
Sbjct: 5   SASSNTTGDENENGSFCVAKGKCTVTYAES-AKKTP---KRRERRLVSDLIRADRKQANG 60

Query: 186 QHLNHSTSTPS 218
           +H N    TP+
Sbjct: 61  KHKNGQKRTPT 71


>SB_12536| Best HMM Match : Oxidored_q2 (HMM E-Value=2)
          Length = 184

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 208 LVEWFRCCTEHMASDNFIRSLIILCNFFFIQIGVLLPIVS 89
           L+  F CC      D  +   ++L  FF      L+P+V+
Sbjct: 39  LISVFTCCLPFALQDFCLALYVLLFGFFEGSFATLMPVVT 78


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 190 CCTEHMASDNFIRSLIILCNFFFIQIGVLLPIVSDKVNCLFIVEINFLA 44
           C ++    D   R    LCNF  I   V      D +NCL  + +  L+
Sbjct: 204 CVSDENTIDGTARERAYLCNFLAIVFLVCGQYFKDYLNCLGCIGLYHLS 252


>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
          Length = 808

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 69  KRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPS 218
           K  +T +E+  K+TP   K++ +R+++DL++      + +H N    TP+
Sbjct: 227 KCTVTYAES-AKKTP---KRRERRLVSDLIRADRKQANGKHKNGQKRTPT 272


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 238 KVKRTGHEGVLVEWFRCCTEHMASDNFI 155
           K+KR    G  VE    C  + ASDN+I
Sbjct: 522 KMKRADSYGTAVEHEDACDNYDASDNYI 549


>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
          Length = 256

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 190 CCTEHMASDNFIRSLIILCNFFFIQIGVLLPIVSDKVNCLFIVEINFLA 44
           C ++    D   R    LCNF  I   V      D +NCL  + +  L+
Sbjct: 204 CVSDENTIDGTARERAYLCNFLAIVFLVCGQYFKDYLNCLGCIGLYHLS 252


>SB_10351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 30  NSNRMARKLISTMKRQLTLSETIGKRTPICMKKKL 134
           ++NR    L S + R+  LS+  G+R   C++ K+
Sbjct: 59  STNRALLSLTSVIGREPVLSQWYGRRRQNCVRNKI 93


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 177  CSVQHLNHSTSTPSCPVRLTFTKP 248
            CSV  L  +T   + PVR+T T P
Sbjct: 2287 CSVTWLKDNTPLDTSPVRITVTHP 2310


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 90  ETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVR 230
           E+ G  T +C KK     ++ ++++ LA+  V  +       +CP R
Sbjct: 455 ESGGSGTQVCRKKAPLITLSHVIRMGLALSLVSDVKEKVWYHTCPNR 501


>SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 128  EVTKDYQRSYEIVARHVLGA 187
            +VTKD   SYE VA +V GA
Sbjct: 1139 QVTKDVSGSYECVASNVGGA 1158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,348
Number of Sequences: 59808
Number of extensions: 153646
Number of successful extensions: 500
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)