Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E08
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.31
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 27 2.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.9
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 26 2.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 3.8
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 3.8
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 3.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 8.9
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 25 8.9
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.31
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +1
Query: 136 VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDHGEGGFWVSYEDP 312
V L+SYP++ ++ + + +LR++N P + F +A P E GF+V D
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873
Query: 313 DT----AGNKASYVKTKNLGGVSI-MDLSMD 390
+T A +AS+ +N + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 429 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 328
D +F + T ++H K G T V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 11 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 100
PT L SA DVR +S + +FH+Y+
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYS 81
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 348 CFHVTSFVSGRVRIFVRNPEATFTMIIRKAEGIGPKTFAR 229
C + SFV+ +P+ +TM RK +G G + F +
Sbjct: 56 CKRIESFVANHQPESQMSPKDKYTMFTRKTQGAGLQGFRK 95
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 3.8
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 25 LGISTTGRTWKLDSDSEISGVPPI------HADKGGEAGPYTKVQGLLSYPEIC 168
LG+S G+T+ L S+ GV + +A KG EA P T V+ L S E C
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC 145
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 94 IHADKGGEAGPYTKVQGLLSY 156
+H + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Frame = +1
Query: 58 LDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAKLINPNQNGKR-----PHLRKV 222
L S+++ + D P T + +P + K ++ +NG P+L+
Sbjct: 464 LSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQKPMDTPENGSNSFAASPYLQPY 523
Query: 223 NDPSKRFGTYAFRLPDDHGEGGF 291
N S+ +Y LP HG F
Sbjct: 524 NSASQLAPSYVGSLPQYHGNPSF 546
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 144 TLNFGIRTSFTTLIGVYRWNSGNFTV*IE 58
T F + SFT+ +YRWN N V IE
Sbjct: 140 TFTFSDKPSFTS---IYRWNVTNSNVTIE 165
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 288 ATFTMIIRKAEGIGPKTFARIVDLTKMRTLSVLVGVN 178
A +I+ EGI R+ D+ K ++ S LVG N
Sbjct: 120 AEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPN 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,172
Number of Sequences: 5004
Number of extensions: 51689
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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