Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E05
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   154   9e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   154   9e-39
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   5.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 9e-39
 Identities = 67/102 (65%), Positives = 81/102 (79%)
 Frame = +2

Query: 83  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 262
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +3

Query: 450 YTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 623
           Y G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHS 176


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 9e-39
 Identities = 67/102 (65%), Positives = 81/102 (79%)
 Frame = +2

Query: 83  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 262
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +3

Query: 450 YTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 623
           Y G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHS 176


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 264 VTSLLD-NRTISRYFGVLYLFLSWTTRR 184
           V   LD N  + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 20/97 (20%), Positives = 41/97 (42%)
 Frame = -3

Query: 439 PXSRSLSATNSFLPXNXTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLNA*VCNLTGN 260
           P + +L  +  F+P N        ++       IA+  +    T+ V+ +++    +T  
Sbjct: 189 PDAWNLPPSLQFIPKNLNRKGLKPVIRAAINSWIAFLLVLARHTNRVLGMSSFFVVITSI 248

Query: 259 IFIG*PYNQSVLWSVVFVFILDNEAFASIVVSFSLTT 149
           +         +LW  +F F+L   A+A  V++  L T
Sbjct: 249 LVPAMEPIAPMLWKTLFQFLLLFSAYAWTVLAAKLAT 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,113
Number of Sequences: 5004
Number of extensions: 50781
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)