Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E05
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   156   2e-38
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   153   8e-38
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    30   1.7  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   7.0  
09_04_0445 - 17677126-17677512,17677608-17678564                       27   9.2  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  156 bits (378), Expect = 2e-38
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +2

Query: 86  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 265
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 266 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)
 Frame = +3

Query: 450 YTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 623
           Y G  E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS
Sbjct: 117 YEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHS 173


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  153 bits (372), Expect = 8e-38
 Identities = 70/101 (69%), Positives = 81/101 (80%)
 Frame = +2

Query: 86  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 265
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 266 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
 Frame = +3

Query: 411 LVAER-LRLXG-QXLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 584
           L+A R L+L G    Y G  E TG++Y VEP D     FR  LDVGL RTTTG RVFGA+
Sbjct: 102 LLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGAL 160

Query: 585 KGAVDGGLNVPHS 623
           KGA+DGGL++PHS
Sbjct: 161 KGALDGGLDIPHS 173


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 491 NIIFITSDFSGTCVEXLSXXPEPFCNQFFLAXQXDQCSRQQHS 363
           NII  T  F+ TC   LS  P   CN +    +  +C +Q  S
Sbjct: 365 NIILSTLKFANTCHNMLSKTPGASCNLYDRIKELIECVQQNAS 407


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 209 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 331
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>09_04_0445 - 17677126-17677512,17677608-17678564
          Length = 447

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 395 AWQERIGCRKAPAXWTVXLH 454
           +W  R GCR  PA W +  H
Sbjct: 168 SWHARSGCRARPARWALFHH 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,802
Number of Sequences: 37544
Number of extensions: 339756
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)