Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E05
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         108   3e-24
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             108   3e-24
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)               32   0.33 
SB_8610| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.1  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   3.1  
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)                  29   4.1  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     28   5.4  
SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   7.1  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   7.1  
SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)                     28   7.1  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   9.4  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               27   9.4  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  108 bits (260), Expect = 3e-24
 Identities = 50/72 (69%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
 Frame = +3

Query: 411 LVAERL--RLXGQXLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 584
           L+A RL  +L    +YTG  EV GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+
Sbjct: 41  LLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGAL 100

Query: 585 KGAVDGGLNVPH 620
           KGAVDGGL +PH
Sbjct: 101 KGAVDGGLEIPH 112



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 31/39 (79%), Positives = 38/39 (97%)
 Frame = +2

Query: 272 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTG 39


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  108 bits (260), Expect = 3e-24
 Identities = 51/74 (68%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
 Frame = +3

Query: 411 LVAERL--RLXGQXLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 584
           L+A RL   L    +YTG  +V GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+
Sbjct: 136 LLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGAL 195

Query: 585 KGAVDGGLNVPHSI 626
           KGAVDGGL +PHS+
Sbjct: 196 KGAVDGGLEIPHSM 209



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +2

Query: 146 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 271
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
          Length = 245

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = -3

Query: 244 PYNQSVLWSVVFVFILDNEAFASIVVSFSLTTPLKFDXXXXXXXXXLYYFHESHFLKYSL 65
           P N  +LWS     ++ NE     + +F ++  L  +          YYF E+  LK   
Sbjct: 22  PLNAFILWSKKRRRVIANEN--PQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKEEH 79

Query: 64  K*KYPHSAHRRHCRKET 14
           K +YPH  ++   R +T
Sbjct: 80  KERYPHYKYQPRKRDKT 96


>SB_8610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
 Frame = +2

Query: 92  VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRL---SNKDV 262
           +K+ K   +  R ++K +++R+G  +       + +D         RL+V     ++ +V
Sbjct: 135 MKIAKTNAH--RVEIKKRKKRKGCLEKKVPMAEMEKDSGHKRKSHARLVVLAGDGTDLEV 192

Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXVAWQERIGCR 421
            C V Y +IE   + C AY  E+P            A +CTG VA    I C+
Sbjct: 193 FCPV-YLKIELTRL-CKAY--EIPTTPKTTKKQMSEALWCTGVVALSSIISCK 241


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 607 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 488
           +P    PF+ P++RAP    A PT+      P P S  TG T
Sbjct: 357 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 607 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 488
           +P    PF+ P++RAP    A PT+      P P S  TG T
Sbjct: 223 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264


>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
          Length = 343

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 29  VSSVGTVRIFLFQGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD 202
           ++S GT RIF+   +F     + ++ N   F    V +K+RR+GK  +Y    L V D
Sbjct: 12  LASRGTARIFIEIFVFFTEFIIGILGN---FLVVWVLYKKRRDGKVIHYFIAALAVSD 66


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 233 LIVRLSNKDVTCQVAYSRIEGD-HIVC 310
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +2

Query: 239 VRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXVAWQERIGC 418
           VRL ++D TC  +YS I  +  +CA Y     R       T  AA   +   +    +  
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGYPGGKNRLAHLFNYTKIAAQLLSEVESRGSNLSA 463

Query: 419 RKAPAXW 439
            +  A W
Sbjct: 464 YEMSALW 470


>SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 417 AERLRLXGQXLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAV 596
           + RL L G  +  G  EV      V  + + P ++RC    GL +TT    +F +   A+
Sbjct: 157 SHRLPLLGTFIGPGNLEVDNFRPRVTSLCSSPSSWRCVTFYGLLKTTGFRGIFPSAFEAI 216

Query: 597 D 599
           +
Sbjct: 217 N 217


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 101 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 196
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 281 SRIEGDHIVCAAYSH-ELPRYGIKVGLTNYAAAY 379
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   QHP*ESLFGSVFCGHCADIFISGNILENGIRESSKEQ 111
           +HP +   G V+C +C D F +G++      E+ +E+
Sbjct: 295 RHPRDHKCGEVYCFNCKDFFRAGHLCHMQKLETEEEK 331


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 86   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 172
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)
          Length = 327

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +3

Query: 252 IKMLPVKLHTHALRVITLSVLPTLMNSHAMVSRWV*LTMLLPTALVXLXGKKELVAERLR 431
           I  LP + H H   ++T ++ PT  N   ++S    L  +   AL  L    E+++  + 
Sbjct: 180 IYALPSRRHNHRTNIVTNNLNPT-FNELFIISGLT-LMEVQQLALQILVIHNEVISRNVV 237

Query: 432 LXGQXLYTGATEVTGDEYNV 491
           +    +     E+TGDE ++
Sbjct: 238 IGEVMVALSGLELTGDEISI 257


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 239 VRLSNKDVTCQVAYSRIEGDHIVCAAY 319
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 98  LSRIPFSKIFPEIKISAQCPQKTLPK 21
           LSRIP S     ++ SA  P KTLP+
Sbjct: 323 LSRIPTSPSLVSLQASASYPYKTLPR 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,597,967
Number of Sequences: 59808
Number of extensions: 406560
Number of successful extensions: 1197
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)