Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E05
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   187   5e-48
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    28   4.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  187 bits (456), Expect = 5e-48
 Identities = 84/102 (82%), Positives = 93/102 (91%)
 Frame = +2

Query: 83  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 262
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATG 102



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +3

Query: 411 LVAERLRLXG-QXLYTGATEVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAM 584
           L    L+  G    Y G  E+TG++YNVE   D  P  F+  LD+GLARTTTG+++F  M
Sbjct: 105 LARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVM 162

Query: 585 KGAVDGGLNVPHS 623
           KG  DGG+NVPHS
Sbjct: 163 KGVADGGINVPHS 175


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 212 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 331
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 329  VHESRQHRQCDHPQCVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGV-CEHSSQF 162
            VH S +H QC HP      LD   +   +++S    E C+    G   V C+H   F
Sbjct: 1084 VHSSIEHLQCPHPYL--NPLDHPQMCITSLKSCSDSETCLKTTSGGNFVCCQHPPSF 1138


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 71  IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 175
           IF K+G V+  K +Q  +R+Q+KF   RE +T Y+
Sbjct: 408 IFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,424
Number of Sequences: 27780
Number of extensions: 296880
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)