Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E05
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 155 3e-38
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 154 5e-38
At2g29800.1 68415.m03620 kelch repeat-containing F-box family pr... 29 2.5
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 29 3.3
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 4.4
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 4.4
At1g63420.1 68414.m07172 expressed protein 27 7.7
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 155 bits (375), Expect = 3e-38
Identities = 68/102 (66%), Positives = 82/102 (80%)
Frame = +2
Query: 83 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 262
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 450 YTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 623
Y G E TG++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS
Sbjct: 119 YEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHS 175
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 154 bits (373), Expect = 5e-38
Identities = 68/102 (66%), Positives = 82/102 (80%)
Frame = +2
Query: 83 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 262
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 263 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 388
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +3
Query: 450 YTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 623
Y G E TG++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS
Sbjct: 119 YEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHS 175
>At2g29800.1 68415.m03620 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 414
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 524 MLLGCRLSTYHYWRSRIWCHE 586
++LGC S++ Y+R +WC E
Sbjct: 356 VILGCYRSSFDYYRKDVWCVE 376
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 604 PPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGST 488
PP+ P AP T P V PTS +AP P S T
Sbjct: 41 PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT 77
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 101 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 274
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 101 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 274
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At1g63420.1 68414.m07172 expressed protein
Length = 578
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +2
Query: 527 LLGCRLSTYHYWRSRI----WCHEGRR 595
LL C LS+ H W +RI W EG+R
Sbjct: 346 LLTCNLSSLHDWNARIFIQDWISEGQR 372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,700
Number of Sequences: 28952
Number of extensions: 267242
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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