Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E04
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   248   3e-67
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   151   9e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   144   1e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    97   1e-21
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   1.3  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   2.3  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   7.2  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   7.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   9.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  248 bits (608), Expect = 3e-67
 Identities = 114/155 (73%), Positives = 134/155 (86%)
 Frame = +3

Query: 3   VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 182
           VVEPYNATLS+HQLVEN+DET+CIDNEAL  I   TLK+ +P+Y DLNHLVS  M+GVTT
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238

Query: 183 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXN 362
             RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS  ++A++VPELTQQMFDA N
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298

Query: 363 MMAACDPRHGRYLTVAAIFRGRMSXKEVDEQMLNI 467
           MM A DPRHGRYLTVAA+FRG++S KEVDEQ+ ++
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSV 333



 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +1

Query: 469 QNKNSSYFVEWIPNNVKTAVCDI 537
           Q KNS+YFVEWIP+NV  AVC +
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSV 356


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  151 bits (365), Expect = 9e-38
 Identities = 64/161 (39%), Positives = 100/161 (62%)
 Frame = +3

Query: 3   VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 182
           VVEPYN+ L+ H  ++N+D T+ +DNEA YDIC R L +  PTY +LN L++  +S +T 
Sbjct: 185 VVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITA 244

Query: 183 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXN 362
            LRF G LN DL +   N+VP+PR+HF +  ++P+ S     + + +V E+T Q F+  N
Sbjct: 245 SLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYN 304

Query: 363 MMAACDPRHGRYLTVAAIFRGRMSXKEVDEQMLNIPKQELV 485
            M  CDPR GRY+    ++RG +  ++V   + +I  +  +
Sbjct: 305 QMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTI 345


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  144 bits (348), Expect = 1e-35
 Identities = 62/161 (38%), Positives = 97/161 (60%)
 Frame = +3

Query: 3   VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 182
           VVEPYN+ L+ H  ++  D T+ +DNE+ YDIC R L +  P+Y +LN L++  +S +T 
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240

Query: 183 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXN 362
            LRF G LN DL +   N+VP+PR+HF +  +AP+ S     + + +V E+T Q F+  N
Sbjct: 241 SLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYN 300

Query: 363 MMAACDPRHGRYLTVAAIFRGRMSXKEVDEQMLNIPKQELV 485
            M  CDPR GRY+    ++RG +  ++V   +  I  +  +
Sbjct: 301 QMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTI 341



 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 463 TSQNKNSSYFVEWIPNNVKTAVCD 534
           T + K +  FV+W P   K  +CD
Sbjct: 334 TIKAKRTIQFVDWCPTGFKIGICD 357


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
 Frame = +3

Query: 3   VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 182
           VV+PYN+ L++ +L  N D    +DN AL  I    L    PT+   N LVS  MS  TT
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241

Query: 183 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRAL---TVPELTQQMFD 353
            LR+PG +N DL  +  +++P PR HF +  + P T++   + +A+   TV ++ +++  
Sbjct: 242 TLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLL 301

Query: 354 AXNMMAACDP-RHGRYLTVAAIFRGRMSXKEVDEQMLNI 467
             N M + +P +   ++++  I +G     +V + +L I
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 396 YLTVAAIFRGRMSXKEVDEQMLNIPKQELVVLRGMDPKQRED 521
           Y+ +  +++GR S   V   ++ +   E ++L G+ PKQ  +
Sbjct: 606 YIILFPLWQGRKSLANVISHIIRLKAPENILLDGLTPKQSSE 647


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 39  QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 218
           Q+  NTD +    N  LY    RT+        DLN   SL + GV    +F G  + + 
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352

Query: 219 RKLAVNMV 242
           R +A+NM+
Sbjct: 353 RYVALNML 360


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 54  TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 158
           T   Y +  E  YDIC   L     T   LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 131 LWRSQSLSLPHHVWRHHL 184
           LW S S SL  H++ HHL
Sbjct: 257 LWYSTSYSLNFHLFYHHL 274


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 500 HSTKYDEFLFWDVKHLLIDFLXRHTTAEDGCDGEV-AAVTRVTRRHHVLSVE 348
           H  +Y +++   VKH LID L      ++  D      V ++T  H ++  E
Sbjct: 271 HDERYKKYVGRFVKHPLIDDLLIPVICDNAVDRHFGTGVLKITPMHSIVDYE 322


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 15   YNATLSVHQLVENTDETYCI 74
            +N  L+V+ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 141 LNHLVSLTMSGVTTCLRFPGQLN 209
           L HLV   + G++ C  +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 18  NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN-HLVSLTMSGVTTCL 188
           N   S+ + +EN    + +   AL D+  + +K    T  DLN  L SLT+    T +
Sbjct: 550 NTNQSLKKNLENGRAEFRLKEIALIDLANQQIKNQDKTIHDLNTELCSLTLDYCNTAV 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,654
Number of Sequences: 5004
Number of extensions: 37658
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)