Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E03
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    27   1.8  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.8  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    26   2.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   2.4  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   3.2  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   3.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   3.2  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   4.3  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   4.3  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   4.3  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    25   5.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   9.8  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +1

Query: 298 DNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 450
           DNS    DE+  A        K R ++  E+ E     +    KQ   G+P
Sbjct: 164 DNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEGTP 214


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 325 MTGAEVPD-LAAIKARVREMEEEAEKLKQMQTEVDKQ 432
           +TG  + D L A+KA+V+E EEE     +   E+ +Q
Sbjct: 244 VTGEGMDDFLEAVKAKVKEYEEEYVPEMERMKEIQRQ 280


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 253 QSNLNNHHFLPFPLFVENMNSALGYK 176
           QSN  N+ FLPF   VEN+   + +K
Sbjct: 6   QSNSKNYVFLPFSKRVENLKIDVAHK 31


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/67 (17%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 223 AENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREME-EEAEK 399
           ++ D+Y D+ D+N++ G     +  ++S  G      + + +   +   V  +E ++   
Sbjct: 116 SQEDEYYDTSDSNYMFGLKHVYDFGEDSFKGYSGQFSSNIVEQIRLHPHVIAVERDQVVS 175

Query: 400 LKQMQTE 420
           +K+++T+
Sbjct: 176 IKKLETQ 182


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 129  GHWHHNGFGYRMLVQCL*PSAEFMFSTNSGN 221
            G W+  GFGY +L Q   P  EF+  T   N
Sbjct: 1588 GRWNGQGFGYMVLTQ---PWREFVCKTTELN 1615


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 253 DNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQ 414
           D++ L+G NG + +T  S    D    +   D   I+   R+  E  ++ K+++
Sbjct: 440 DDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 343 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 450
           P+LA  +AR +E   E  KLK + T  ++ +    P
Sbjct: 89  PELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKP 124


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 310 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQ 432
           G  D +      +LAA +A  ++ E EAE L+ +Q E++K+
Sbjct: 572 GQADTLATQREAELAAQRALKQKQESEAESLR-VQEEINKR 611


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 370 VREMEEEAEKLKQMQTEVDKQMSMGSPP 453
           ++++EEE EKL+ ++  +++++S    P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 280 RLFRPSDCCQSNLNNHHFLPFPLFVENMN 194
           R + P D  + +L + HFLPFP +   ++
Sbjct: 781 RNYMPIDKNEISLRSVHFLPFPTYKSELD 809


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 189 AEFMFSTNSGNGRK**LFRFD*QQS----LGRN-KRFLEHD*QQSW 311
           A F+  T +   +K  +FR D  Q+    LGR  KRF  HD  Q W
Sbjct: 250 AGFLVYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGW 295


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 310 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQ 408
           G   +++GAE  D+AA+    +E  EEA+ + +
Sbjct: 136 GDATDVSGAEQTDVAAVLPITQEAVEEAKPITE 168


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 280  GSLNMTDNSLGGGDEMTGAEVPD 348
            G++N T  +  GG+++  AE+ D
Sbjct: 1339 GNINRTTEASSGGEQVDAAEIKD 1361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,644
Number of Sequences: 5004
Number of extensions: 30265
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)